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ggsurvplot_combine runs without warnings
getting a "select_" deprecation warning while building the survival table
library(survival) library(survminer) data("lung") fit1 <- survfit(Surv(time, status) ~ sex, data = lung) fit2 <- survfit(Surv(time, status) ~ sex, data = lung, start.time=250) p <- ggsurvplot_combine(list( original=fit1, conditional=fit2 ), data = lung)
Warning messages: 1: Problem while computing survtable = purrr::map2(...). ℹ select_() was deprecated in dplyr 0.7.0. Please use select() instead.
survtable = purrr::map2(...)
select_()
select()
session_info()
> sessionInfo() R version 3.6.2 (2019-12-12) Platform: x86_64-apple-darwin19.0.0 (64-bit) Running under: macOS 10.16 Matrix products: default BLAS/LAPACK: /Users/tbaer/.brew/Cellar/openblas/0.3.7/lib/libopenblasp-r0.3.7.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] survminer_0.4.6 ggpubr_0.4.0 ggplot2_3.3.5 survival_3.1-12 loaded via a namespace (and not attached): [1] zoo_1.8-9 xfun_0.13 tidyselect_1.1.1 purrr_0.3.4 [5] splines_3.6.2 haven_2.4.3 lattice_0.20-41 carData_3.0-4 [9] colorspace_1.4-1 vctrs_0.3.8 generics_0.0.2 utf8_1.1.4 [13] survMisc_0.5.5 rlang_1.0.1 pillar_1.7.0 foreign_0.8-76 [17] glue_1.6.1 withr_2.4.3 DBI_1.1.0 readxl_1.3.1 [21] lifecycle_1.0.1 munsell_0.5.0 ggsignif_0.6.3 gtable_0.3.0 [25] cellranger_1.1.0 zip_2.2.0 labeling_0.3 knitr_1.28 [29] rio_0.5.27 forcats_0.5.1 curl_4.3 fansi_0.4.1 [33] broom_0.7.10 Rcpp_1.0.4.6 xtable_1.8-4 backports_1.1.6 [37] scales_1.1.0 abind_1.4-5 farver_2.0.3 km.ci_0.5-2 [41] gridExtra_2.3 hms_1.1.1 stringi_1.4.6 openxlsx_4.2.4 [45] rstatix_0.7.0 dplyr_1.0.8 KMsurv_0.1-5 grid_3.6.2 [49] cli_3.1.0 tools_3.6.2 magrittr_2.0.2 tibble_3.1.6 [53] crayon_1.5.0 car_3.0-11 tidyr_1.2.0 pkgconfig_2.0.3 [57] ellipsis_0.3.2 Matrix_1.2-18 data.table_1.14.2 assertthat_0.2.1 [61] R6_2.4.1 compiler_3.6.2
The text was updated successfully, but these errors were encountered:
addresses kassambara#578 - use dplyr::select insstead of select_
c4a3de1
See also #509 and #460
https://github.com/kassambara/survminer/search?q=select_
Sorry, something went wrong.
kassambara#578 update tests and replace a few select and as.tibbles
359c0c0
Merge pull request #579 from tbaer-c7ks7s/dplyr_1_warnings
645aac3
addresses #578 - use dplyr::select insstead of select_
fixed in #579 and #665
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Expected behavior
ggsurvplot_combine runs without warnings
Actual behavior
getting a "select_" deprecation warning while building the survival table
Steps to reproduce the problem
session_info()
The text was updated successfully, but these errors were encountered: