linting with correct snakefmt version

khanlab · Oct 2, 2023 · 8b0480f · 8b0480f
1 parent b6d906f
commit 8b0480f
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Showing 3 changed files with 0 additions and 6 deletions.
diff --git a/hippunfold/workflow/Snakefile b/hippunfold/workflow/Snakefile
@@ -118,12 +118,10 @@ if config["modality"] == "segT1w" or config["modality"] == "segT2w":
 
     include: "rules/preproc_seg.smk"
 
-
 elif config["modality"] == "cropseg":
 
     include: "rules/preproc_cropseg.smk"
 
-
 else:
 
     include: "rules/nnunet.smk"
@@ -168,15 +166,13 @@ if config["use_template_seg"]:
 
         include: "rules/templateseg.smk"
 
-
     else:
         print(
             "use_template_seg is not possible, template dseg or coords do not exist for the chosen template"
         )
 
         include: "rules/shape_inject.smk"
 
-
 else:
 
     include: "rules/shape_inject.smk"

diff --git a/hippunfold/workflow/rules/preproc_t1.smk b/hippunfold/workflow/rules/preproc_t1.smk
@@ -42,7 +42,6 @@ if config["skip_preproc"]:
         shell:
             "cp {input} {output}"
 
-
 else:
 
     rule n4_t1:

diff --git a/hippunfold/workflow/rules/preproc_t2.smk b/hippunfold/workflow/rules/preproc_t2.smk
@@ -158,7 +158,6 @@ if config["skip_preproc"]:
         shell:
             "cp {input} {output}"
 
-
 else:
 
     # average aligned n4 images to get preproc T2w (or if single scan, just copy it)
-Original file line number
+Diff line change
@@ Expand Up / @@ -42,7 +42,6 @@ if config["skip_preproc"]: @@
             shell:
                 "cp {input} {output}"
     else:
         rule n4_t1:
@@ Expand Down @@