diff --git a/hippunfold/config/snakebids.yml b/hippunfold/config/snakebids.yml index 600b402a..0140a031 100644 --- a/hippunfold/config/snakebids.yml +++ b/hippunfold/config/snakebids.yml @@ -409,20 +409,20 @@ atlas: atlas_files: multihist7: - label_nii: resources/altases-unfolded/multihist7/sub-maxprob_label-hipp_desc-manualsubfieldsunfoldaligned_dseg.nii.gz - label_list: resources/altases-unfolded/multihist7/labellist.txt - thick: resources/altases-unfolded/multihist7/thickness.nii.gz - curv: resources/altases-unfolded/multihist7/curvature.nii.gz - gyr: resources/altases-unfolded/multihist7/gyrification.nii.gz + label_nii: resources/atlases-unfolded/multihist7/sub-maxprob_label-hipp_desc-manualsubfieldsunfoldaligned_dseg.nii.gz + label_list: resources/atlases-unfolded/multihist7/labellist.txt + thick: resources/atlases-unfolded/multihist7/thickness.nii.gz + curv: resources/atlases-unfolded/multihist7/curvature.nii.gz + gyr: resources/atlases-unfolded/multihist7/gyrification.nii.gz bigbrain: - label_nii: resources/altases-unfolded/bigbrain/sub-bigbrain_hemi-{hemi}_label-hipp_desc-manualsubfields_dseg.nii.gz - label_list: resources/altases-unfolded/bigbrain/sub-bigbrain_labellist.txt + label_nii: resources/atlases-unfolded/bigbrain/sub-bigbrain_hemi-{hemi}_label-hipp_desc-manualsubfields_dseg.nii.gz + label_list: resources/atlases-unfolded/bigbrain/sub-bigbrain_labellist.txt magdeburg: - label_nii: resources/altases-unfolded/magdeburg/sub-all_hemi-{hemi}_label-hipp_desc-manualsubfields_maxprob.nii.gz - label_list: resources/altases-unfolded/magdeburg/magdeburg_labellist.txt + label_nii: resources/atlases-unfolded/magdeburg/sub-all_hemi-{hemi}_label-hipp_desc-manualsubfields_maxprob.nii.gz + label_list: resources/atlases-unfolded/magdeburg/magdeburg_labellist.txt freesurfer: - label_nii: resources/altases-unfolded/freesurfer/sub-all_hemi-{hemi}_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz - label_list: resources/altases-unfolded/freesurfer/freesurfer_labellist.txt + label_nii: resources/atlases-unfolded/freesurfer/sub-all_hemi-{hemi}_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz + label_list: resources/atlases-unfolded/freesurfer/freesurfer_labellist.txt inject_template: upenn diff --git a/hippunfold/resources/altases-unfolded/bigbrain/bigbrain_snaplabels.txt b/hippunfold/resources/atlases-unfolded/bigbrain/bigbrain_snaplabels.txt similarity index 100% rename from hippunfold/resources/altases-unfolded/bigbrain/bigbrain_snaplabels.txt rename to hippunfold/resources/atlases-unfolded/bigbrain/bigbrain_snaplabels.txt diff --git a/hippunfold/resources/altases-unfolded/bigbrain/desc-subfields_atlas-bigbrain_dseg.tsv b/hippunfold/resources/atlases-unfolded/bigbrain/desc-subfields_atlas-bigbrain_dseg.tsv similarity index 100% rename from hippunfold/resources/altases-unfolded/bigbrain/desc-subfields_atlas-bigbrain_dseg.tsv rename to hippunfold/resources/atlases-unfolded/bigbrain/desc-subfields_atlas-bigbrain_dseg.tsv diff --git a/hippunfold/resources/altases-unfolded/bigbrain/sub-bigbrain_hemi-L_label-hipp_desc-manualsubfields_dseg.nii.gz b/hippunfold/resources/atlases-unfolded/bigbrain/sub-bigbrain_hemi-L_label-hipp_desc-manualsubfields_dseg.nii.gz similarity index 100% rename from hippunfold/resources/altases-unfolded/bigbrain/sub-bigbrain_hemi-L_label-hipp_desc-manualsubfields_dseg.nii.gz rename to hippunfold/resources/atlases-unfolded/bigbrain/sub-bigbrain_hemi-L_label-hipp_desc-manualsubfields_dseg.nii.gz diff --git a/hippunfold/resources/altases-unfolded/bigbrain/sub-bigbrain_hemi-R_label-hipp_desc-manualsubfields_dseg.nii.gz b/hippunfold/resources/atlases-unfolded/bigbrain/sub-bigbrain_hemi-R_label-hipp_desc-manualsubfields_dseg.nii.gz similarity index 100% rename from hippunfold/resources/altases-unfolded/bigbrain/sub-bigbrain_hemi-R_label-hipp_desc-manualsubfields_dseg.nii.gz rename to hippunfold/resources/atlases-unfolded/bigbrain/sub-bigbrain_hemi-R_label-hipp_desc-manualsubfields_dseg.nii.gz diff --git a/hippunfold/resources/altases-unfolded/bigbrain/sub-bigbrain_labellist.txt b/hippunfold/resources/atlases-unfolded/bigbrain/sub-bigbrain_labellist.txt similarity index 100% rename from hippunfold/resources/altases-unfolded/bigbrain/sub-bigbrain_labellist.txt rename to hippunfold/resources/atlases-unfolded/bigbrain/sub-bigbrain_labellist.txt diff --git a/hippunfold/resources/altases-unfolded/freesurfer/README.md b/hippunfold/resources/atlases-unfolded/freesurfer/README.md similarity index 100% rename from hippunfold/resources/altases-unfolded/freesurfer/README.md rename to hippunfold/resources/atlases-unfolded/freesurfer/README.md diff --git a/hippunfold/resources/altases-unfolded/freesurfer/desc-subfields_atlas-freesurfer_dseg.tsv b/hippunfold/resources/atlases-unfolded/freesurfer/desc-subfields_atlas-freesurfer_dseg.tsv similarity index 100% rename from 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a/hippunfold/resources/altases-unfolded/freesurfer/sub-all_hemi-R_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz b/hippunfold/resources/atlases-unfolded/freesurfer/sub-all_hemi-R_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz similarity index 100% rename from hippunfold/resources/altases-unfolded/freesurfer/sub-all_hemi-R_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz rename to hippunfold/resources/atlases-unfolded/freesurfer/sub-all_hemi-R_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz diff --git a/hippunfold/resources/altases-unfolded/magdeburg/README.md b/hippunfold/resources/atlases-unfolded/magdeburg/README.md similarity index 100% rename from hippunfold/resources/altases-unfolded/magdeburg/README.md rename to hippunfold/resources/atlases-unfolded/magdeburg/README.md diff --git a/hippunfold/resources/altases-unfolded/magdeburg/desc-subfields_atlas-magdeburg_dseg.tsv 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