From c80958d250e7b80415161352314f02aaeef56e66 Mon Sep 17 00:00:00 2001 From: "Jordan DeKraker - B. Bernhardt Lab" Date: Thu, 12 Oct 2023 12:46:30 -0400 Subject: [PATCH] typo again --- hippunfold/config/snakebids.yml | 22 +++++++++--------- .../bigbrain/bigbrain_snaplabels.txt | 0 .../desc-subfields_atlas-bigbrain_dseg.tsv | 0 ...abel-hipp_desc-manualsubfields_dseg.nii.gz | Bin ...abel-hipp_desc-manualsubfields_dseg.nii.gz | Bin .../bigbrain/sub-bigbrain_labellist.txt | 0 .../freesurfer/README.md | 0 .../desc-subfields_atlas-freesurfer_dseg.tsv | 0 .../desc-subfields_freeview_desg.tsv | 0 .../freesurfer/freesurfer_labellist.txt | 0 .../freesurfer/maxprob_labellist.txt | 0 ...-hipp_desc-freesurfersubfields_dseg.nii.gz | Bin ...-hipp_desc-freesurfersubfields_dseg.nii.gz | Bin .../magdeburg/README.md | 0 .../desc-subfields_atlas-magdeburg_dseg.tsv | 0 .../magdeburg/magdeburg_labellist.txt | 0 .../magdeburg/magdeburg_snaplabels.txt | 0 ...l-hipp_desc-manualsubfields_maxprob.nii.gz | Bin ...l-hipp_desc-manualsubfields_maxprob.nii.gz | Bin .../multihist7/curvature.nii.gz | Bin .../desc-subfields_atlas-multihist7_dseg.tsv | 0 .../multihist7/gyrification.nii.gz | Bin .../multihist7/labellist.txt | 0 .../multihist7/snaplabels.txt | 0 ...c-manualsubfieldsunfoldaligned_dseg.nii.gz | Bin .../multihist7/thickness.nii.gz | Bin .../multihist7/unfolded2Dref.nii.gz | Bin 27 files changed, 11 insertions(+), 11 deletions(-) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/bigbrain/bigbrain_snaplabels.txt (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/bigbrain/desc-subfields_atlas-bigbrain_dseg.tsv (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/bigbrain/sub-bigbrain_hemi-L_label-hipp_desc-manualsubfields_dseg.nii.gz (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/bigbrain/sub-bigbrain_hemi-R_label-hipp_desc-manualsubfields_dseg.nii.gz (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/bigbrain/sub-bigbrain_labellist.txt (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/freesurfer/README.md (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/freesurfer/desc-subfields_atlas-freesurfer_dseg.tsv (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/freesurfer/desc-subfields_freeview_desg.tsv (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/freesurfer/freesurfer_labellist.txt (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/freesurfer/maxprob_labellist.txt (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/freesurfer/sub-all_hemi-L_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/freesurfer/sub-all_hemi-R_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/magdeburg/README.md (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/magdeburg/desc-subfields_atlas-magdeburg_dseg.tsv (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/magdeburg/magdeburg_labellist.txt (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/magdeburg/magdeburg_snaplabels.txt (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/magdeburg/sub-all_hemi-L_label-hipp_desc-manualsubfields_maxprob.nii.gz (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/magdeburg/sub-all_hemi-R_label-hipp_desc-manualsubfields_maxprob.nii.gz (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/multihist7/curvature.nii.gz (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/multihist7/desc-subfields_atlas-multihist7_dseg.tsv (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/multihist7/gyrification.nii.gz (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/multihist7/labellist.txt (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/multihist7/snaplabels.txt (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/multihist7/sub-maxprob_label-hipp_desc-manualsubfieldsunfoldaligned_dseg.nii.gz (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/multihist7/thickness.nii.gz (100%) rename hippunfold/resources/{altases-unfolded => atlases-unfolded}/multihist7/unfolded2Dref.nii.gz (100%) diff --git a/hippunfold/config/snakebids.yml b/hippunfold/config/snakebids.yml index 600b402a..0140a031 100644 --- a/hippunfold/config/snakebids.yml +++ b/hippunfold/config/snakebids.yml @@ -409,20 +409,20 @@ atlas: atlas_files: multihist7: - label_nii: resources/altases-unfolded/multihist7/sub-maxprob_label-hipp_desc-manualsubfieldsunfoldaligned_dseg.nii.gz - label_list: resources/altases-unfolded/multihist7/labellist.txt - thick: resources/altases-unfolded/multihist7/thickness.nii.gz - curv: resources/altases-unfolded/multihist7/curvature.nii.gz - gyr: resources/altases-unfolded/multihist7/gyrification.nii.gz + label_nii: resources/atlases-unfolded/multihist7/sub-maxprob_label-hipp_desc-manualsubfieldsunfoldaligned_dseg.nii.gz + label_list: resources/atlases-unfolded/multihist7/labellist.txt + thick: resources/atlases-unfolded/multihist7/thickness.nii.gz + curv: resources/atlases-unfolded/multihist7/curvature.nii.gz + gyr: resources/atlases-unfolded/multihist7/gyrification.nii.gz bigbrain: - label_nii: resources/altases-unfolded/bigbrain/sub-bigbrain_hemi-{hemi}_label-hipp_desc-manualsubfields_dseg.nii.gz - label_list: resources/altases-unfolded/bigbrain/sub-bigbrain_labellist.txt + label_nii: resources/atlases-unfolded/bigbrain/sub-bigbrain_hemi-{hemi}_label-hipp_desc-manualsubfields_dseg.nii.gz + label_list: resources/atlases-unfolded/bigbrain/sub-bigbrain_labellist.txt magdeburg: - label_nii: resources/altases-unfolded/magdeburg/sub-all_hemi-{hemi}_label-hipp_desc-manualsubfields_maxprob.nii.gz - label_list: resources/altases-unfolded/magdeburg/magdeburg_labellist.txt + label_nii: resources/atlases-unfolded/magdeburg/sub-all_hemi-{hemi}_label-hipp_desc-manualsubfields_maxprob.nii.gz + label_list: resources/atlases-unfolded/magdeburg/magdeburg_labellist.txt freesurfer: - label_nii: resources/altases-unfolded/freesurfer/sub-all_hemi-{hemi}_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz - label_list: resources/altases-unfolded/freesurfer/freesurfer_labellist.txt + label_nii: resources/atlases-unfolded/freesurfer/sub-all_hemi-{hemi}_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz + label_list: resources/atlases-unfolded/freesurfer/freesurfer_labellist.txt inject_template: upenn diff --git a/hippunfold/resources/altases-unfolded/bigbrain/bigbrain_snaplabels.txt b/hippunfold/resources/atlases-unfolded/bigbrain/bigbrain_snaplabels.txt similarity index 100% rename from hippunfold/resources/altases-unfolded/bigbrain/bigbrain_snaplabels.txt rename to hippunfold/resources/atlases-unfolded/bigbrain/bigbrain_snaplabels.txt diff --git a/hippunfold/resources/altases-unfolded/bigbrain/desc-subfields_atlas-bigbrain_dseg.tsv b/hippunfold/resources/atlases-unfolded/bigbrain/desc-subfields_atlas-bigbrain_dseg.tsv similarity index 100% rename from hippunfold/resources/altases-unfolded/bigbrain/desc-subfields_atlas-bigbrain_dseg.tsv rename to hippunfold/resources/atlases-unfolded/bigbrain/desc-subfields_atlas-bigbrain_dseg.tsv diff --git a/hippunfold/resources/altases-unfolded/bigbrain/sub-bigbrain_hemi-L_label-hipp_desc-manualsubfields_dseg.nii.gz b/hippunfold/resources/atlases-unfolded/bigbrain/sub-bigbrain_hemi-L_label-hipp_desc-manualsubfields_dseg.nii.gz similarity index 100% rename from hippunfold/resources/altases-unfolded/bigbrain/sub-bigbrain_hemi-L_label-hipp_desc-manualsubfields_dseg.nii.gz rename to hippunfold/resources/atlases-unfolded/bigbrain/sub-bigbrain_hemi-L_label-hipp_desc-manualsubfields_dseg.nii.gz diff --git a/hippunfold/resources/altases-unfolded/bigbrain/sub-bigbrain_hemi-R_label-hipp_desc-manualsubfields_dseg.nii.gz b/hippunfold/resources/atlases-unfolded/bigbrain/sub-bigbrain_hemi-R_label-hipp_desc-manualsubfields_dseg.nii.gz similarity index 100% rename from hippunfold/resources/altases-unfolded/bigbrain/sub-bigbrain_hemi-R_label-hipp_desc-manualsubfields_dseg.nii.gz rename to hippunfold/resources/atlases-unfolded/bigbrain/sub-bigbrain_hemi-R_label-hipp_desc-manualsubfields_dseg.nii.gz diff --git a/hippunfold/resources/altases-unfolded/bigbrain/sub-bigbrain_labellist.txt b/hippunfold/resources/atlases-unfolded/bigbrain/sub-bigbrain_labellist.txt similarity index 100% rename from hippunfold/resources/altases-unfolded/bigbrain/sub-bigbrain_labellist.txt rename to hippunfold/resources/atlases-unfolded/bigbrain/sub-bigbrain_labellist.txt diff --git a/hippunfold/resources/altases-unfolded/freesurfer/README.md b/hippunfold/resources/atlases-unfolded/freesurfer/README.md similarity index 100% rename from hippunfold/resources/altases-unfolded/freesurfer/README.md rename to hippunfold/resources/atlases-unfolded/freesurfer/README.md diff --git a/hippunfold/resources/altases-unfolded/freesurfer/desc-subfields_atlas-freesurfer_dseg.tsv b/hippunfold/resources/atlases-unfolded/freesurfer/desc-subfields_atlas-freesurfer_dseg.tsv similarity index 100% rename from hippunfold/resources/altases-unfolded/freesurfer/desc-subfields_atlas-freesurfer_dseg.tsv rename to hippunfold/resources/atlases-unfolded/freesurfer/desc-subfields_atlas-freesurfer_dseg.tsv diff --git a/hippunfold/resources/altases-unfolded/freesurfer/desc-subfields_freeview_desg.tsv b/hippunfold/resources/atlases-unfolded/freesurfer/desc-subfields_freeview_desg.tsv similarity index 100% rename from hippunfold/resources/altases-unfolded/freesurfer/desc-subfields_freeview_desg.tsv rename to hippunfold/resources/atlases-unfolded/freesurfer/desc-subfields_freeview_desg.tsv diff --git a/hippunfold/resources/altases-unfolded/freesurfer/freesurfer_labellist.txt b/hippunfold/resources/atlases-unfolded/freesurfer/freesurfer_labellist.txt similarity index 100% rename from hippunfold/resources/altases-unfolded/freesurfer/freesurfer_labellist.txt rename to hippunfold/resources/atlases-unfolded/freesurfer/freesurfer_labellist.txt diff --git a/hippunfold/resources/altases-unfolded/freesurfer/maxprob_labellist.txt b/hippunfold/resources/atlases-unfolded/freesurfer/maxprob_labellist.txt similarity index 100% rename from hippunfold/resources/altases-unfolded/freesurfer/maxprob_labellist.txt rename to hippunfold/resources/atlases-unfolded/freesurfer/maxprob_labellist.txt diff --git a/hippunfold/resources/altases-unfolded/freesurfer/sub-all_hemi-L_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz b/hippunfold/resources/atlases-unfolded/freesurfer/sub-all_hemi-L_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz similarity index 100% rename from hippunfold/resources/altases-unfolded/freesurfer/sub-all_hemi-L_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz rename to hippunfold/resources/atlases-unfolded/freesurfer/sub-all_hemi-L_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz diff --git a/hippunfold/resources/altases-unfolded/freesurfer/sub-all_hemi-R_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz b/hippunfold/resources/atlases-unfolded/freesurfer/sub-all_hemi-R_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz similarity index 100% rename from hippunfold/resources/altases-unfolded/freesurfer/sub-all_hemi-R_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz rename to hippunfold/resources/atlases-unfolded/freesurfer/sub-all_hemi-R_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz diff --git a/hippunfold/resources/altases-unfolded/magdeburg/README.md b/hippunfold/resources/atlases-unfolded/magdeburg/README.md similarity index 100% rename from hippunfold/resources/altases-unfolded/magdeburg/README.md rename to hippunfold/resources/atlases-unfolded/magdeburg/README.md diff --git a/hippunfold/resources/altases-unfolded/magdeburg/desc-subfields_atlas-magdeburg_dseg.tsv b/hippunfold/resources/atlases-unfolded/magdeburg/desc-subfields_atlas-magdeburg_dseg.tsv similarity index 100% rename from hippunfold/resources/altases-unfolded/magdeburg/desc-subfields_atlas-magdeburg_dseg.tsv rename to hippunfold/resources/atlases-unfolded/magdeburg/desc-subfields_atlas-magdeburg_dseg.tsv diff --git a/hippunfold/resources/altases-unfolded/magdeburg/magdeburg_labellist.txt b/hippunfold/resources/atlases-unfolded/magdeburg/magdeburg_labellist.txt similarity index 100% rename from hippunfold/resources/altases-unfolded/magdeburg/magdeburg_labellist.txt rename to 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a/hippunfold/resources/altases-unfolded/magdeburg/sub-all_hemi-R_label-hipp_desc-manualsubfields_maxprob.nii.gz b/hippunfold/resources/atlases-unfolded/magdeburg/sub-all_hemi-R_label-hipp_desc-manualsubfields_maxprob.nii.gz similarity index 100% rename from hippunfold/resources/altases-unfolded/magdeburg/sub-all_hemi-R_label-hipp_desc-manualsubfields_maxprob.nii.gz rename to hippunfold/resources/atlases-unfolded/magdeburg/sub-all_hemi-R_label-hipp_desc-manualsubfields_maxprob.nii.gz diff --git a/hippunfold/resources/altases-unfolded/multihist7/curvature.nii.gz b/hippunfold/resources/atlases-unfolded/multihist7/curvature.nii.gz similarity index 100% rename from hippunfold/resources/altases-unfolded/multihist7/curvature.nii.gz rename to hippunfold/resources/atlases-unfolded/multihist7/curvature.nii.gz diff --git a/hippunfold/resources/altases-unfolded/multihist7/desc-subfields_atlas-multihist7_dseg.tsv 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a/hippunfold/resources/altases-unfolded/multihist7/snaplabels.txt b/hippunfold/resources/atlases-unfolded/multihist7/snaplabels.txt similarity index 100% rename from hippunfold/resources/altases-unfolded/multihist7/snaplabels.txt rename to hippunfold/resources/atlases-unfolded/multihist7/snaplabels.txt diff --git a/hippunfold/resources/altases-unfolded/multihist7/sub-maxprob_label-hipp_desc-manualsubfieldsunfoldaligned_dseg.nii.gz b/hippunfold/resources/atlases-unfolded/multihist7/sub-maxprob_label-hipp_desc-manualsubfieldsunfoldaligned_dseg.nii.gz similarity index 100% rename from hippunfold/resources/altases-unfolded/multihist7/sub-maxprob_label-hipp_desc-manualsubfieldsunfoldaligned_dseg.nii.gz rename to hippunfold/resources/atlases-unfolded/multihist7/sub-maxprob_label-hipp_desc-manualsubfieldsunfoldaligned_dseg.nii.gz diff --git a/hippunfold/resources/altases-unfolded/multihist7/thickness.nii.gz b/hippunfold/resources/atlases-unfolded/multihist7/thickness.nii.gz similarity index 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