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fix in template_files
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akhanf committed Oct 2, 2023
1 parent 8b0480f commit cc769ec
Showing 1 changed file with 4 additions and 10 deletions.
14 changes: 4 additions & 10 deletions hippunfold/config/snakebids.yml
Original file line number Diff line number Diff line change
Expand Up @@ -396,6 +396,10 @@ template_files:
Mask_crop: resources/tpl-MBMv3/tpl-MBMv3_hemi-{hemi}_space-corobl_desc-hipp_mask.nii.gz
dseg: resources/tpl-MBMv3/tpl-MBMv3_hemi-R_space-corobl_desc-tissue_dseg.nii.gz
coords: resources/tpl-MBMv3/tpl-MBMv3_dir-{dir}_hemi-R_space-corobl_label-{autotop}_desc-laplace_coords.nii.gz
upenn:
dseg: resources/tpl-upenn/tpl-upenn_desc-hipptissue_dseg.nii.gz
coords: resources/tpl-upenn/tpl-upenn_dir-{dir}_label-{autotop}_coords.nii.gz




Expand Down Expand Up @@ -423,16 +427,6 @@ atlas_files:

inject_template: upenn

inject_template_files:
upenn:
dseg: resources/tpl-upenn/tpl-upenn_desc-hipptissue_dseg.nii.gz
coords: resources/tpl-upenn/tpl-upenn_dir-{dir}_label-{autotop}_coords.nii.gz
MBMv2:
dseg: resources/tpl-MBMv2/tpl-MBMv2_hemi-R_space-corobl_desc-tissuemanual_dseg.nii.gz
coords: resources/tpl-MBMv2/tpl-MBMv2_dir-{dir}_hemi-R_space-corobl_label-{autotop}_desc-laplace_coords.nii.gz
MBMv3:
dseg: resources/tpl-MBMv3/tpl-MBMv3_hemi-R_space-corobl_desc-tissue_dseg.nii.gz
coords: resources/tpl-MBMv3/tpl-MBMv3_dir-{dir}_hemi-R_space-corobl_label-{autotop}_desc-laplace_coords.nii.gz

#values to use for re-mapping tissue labels when combining with subfields.
# set the SRLM and Cyst labels to always be higher than any label in the atlas (so they override)
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