From cfba0322327a9e42780e11e31f47000890595461 Mon Sep 17 00:00:00 2001 From: Jordan DeKraker Date: Thu, 27 Jun 2024 17:36:34 -0400 Subject: [PATCH] minor bugs caught in wet-run testing --- hippunfold/config/snakebids.yml | 19 +++++++++++-------- 1 file changed, 11 insertions(+), 8 deletions(-) diff --git a/hippunfold/config/snakebids.yml b/hippunfold/config/snakebids.yml index 7683c96c..3c32c6c6 100644 --- a/hippunfold/config/snakebids.yml +++ b/hippunfold/config/snakebids.yml @@ -420,18 +420,18 @@ template_files: T1w: Template_sym_MTR_80um.nii.gz T2w: Template_sym_T2_80um.nii.gz xfm_corobl: tpl-MBMv2_from-native_to-corobl_type-itk_affine.txt - crop_ref: tpl-MBMv2_hemi-{hemi}_space-corobl_{modality}.nii.gz - Mask_crop: tpl-MBMv2_hemi-{hemi}_space-corobl_desc-hipp_mask.nii.gz + crop_ref: tpl-MBMv2_hemi-R_space-corobl_{modality}.nii.gz + Mask_crop: tpl-MBMv2_hemi-R_space-corobl_desc-hipp_mask.nii.gz dseg: tpl-MBMv2_hemi-R_space-corobl_desc-tissuemanual_dseg.nii.gz coords: tpl-MBMv2_dir-{dir}_hemi-R_space-corobl_label-{autotop}_desc-laplace_coords.nii.gz MBMv3: T1w: tpl-MBMv3_T1w.nii.gz T2w: tpl-MBMv3_T2w.nii.gz xfm_corobl: tpl-MBMv3_from-native_to-corobl_type-itk_affine.txt - crop_ref: tpl-MBMv3_hemi-{hemi}_space-corobl_T1w.nii.gz - Mask_crop: tpl-MBMv3_hemi-{hemi}_space-corobl_desc-hipp_mask.nii.gz - dseg: tpl-MBMv3_hemi-{hemi}_space-corobl_desc-tissuemanual_dseg.nii.gz - coords: tpl-MBMv3_dir-{dir}_hemi-{hemi}_space-corobl_label-{autotop}_desc-laplace_coords.nii.gz + crop_ref: tpl-MBMv3_hemi-R_space-corobl_T1w.nii.gz + Mask_crop: tpl-MBMv3_hemi-R_space-corobl_desc-hipp_mask.nii.gz + dseg: tpl-MBMv3_hemi-R_space-corobl_desc-tissuemanual_dseg.nii.gz + coords: tpl-MBMv3_dir-{dir}_hemi-R_space-corobl_label-{autotop}_desc-laplace_coords.nii.gz CIVM: T1w: tpl-CIVM_T1w.nii.gz xfm_corobl: tpl-CIVM_from-native_to-corobl_type-itk_affine.txt @@ -469,7 +469,7 @@ atlas_files: label_list: magdeburg_labellist.txt freesurfer: label_nii: sub-all_hemi-{hemi}_space-unfold_label-hipp_desc-freesurfersubfields_dseg.nii.gz - lut: desc-subfields_atlas-mfreesurfer_dseg.tsv + lut: desc-subfields_atlas-freesurfer_dseg.tsv label_list: freesurfer_labellist.txt macaque: label_nii: sub-bigmac_hemi-{hemi}_space-unfold_label-hipp_desc-macaquesubfields_dseg.nii.gz @@ -508,7 +508,10 @@ tissue_atlas_mapping: dg: 6 srlm: 7 cyst: 8 - + macaque: + dg: 6 + srlm: 7 + cyst: 8 rigid_reg_template: False no_reg_template: False