Releases · kingaa/pomp

A new format argument has been added to the extractor functions cond_logLik, eff_sample_size, filter_mean, filter_traj, forecast, pred_mean, pred_var, and saved_states. This allows the user to extract the relevant elements in data-frame format if desired.
pomp no longer depends on the superseded packages reshape2 or plyr.
pomp has a new dependency on the package dplyr.
The magrittr pipe %>% is no longer re-exported by pomp: use the native R pipe, |>, instead.
The package now requires R version 4.1 at least.

All pomp functions with names.that.contain.dots have been deprecated in favor of functions in snake_case. This is to avoid anticipated problems with CRAN checks, which (falsely) assume that certain functions with dotted.names are S3 methods. From this point, no expored pomp function has such a name.
The dimnames attributes for some of the arrays computed in pfilter and pmcmc computations have changed. In particular, whereas in previous versions, the time dimension was given names that were character strings composed of decimal representations of the time (difficult to work with and prone to roundoff error), the time dimension now is not given names.
A bug that resulted in gompertz giving different simulations on Windows machines has been fixed.

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