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API-Documentation.md

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Get Samples

Method: GET

Endpoint: /metadata/samples

Returns:

{
    "fasta_data": "example",
    "vcf_data": "example",
    "bed_data": "example"
}

Get Model List

Method: GET

Endpoint: /metadata/model_list

Returns:

[
    {
        "group": "Basenji",
        "model": "Basenji",
        "environment": "kipoi-py3-keras2"
    },
    {
        "group": "Basset",
        "model": "Basset",
        "environment": "kipoi-py3-keras2"
    },
    {
        "group": "DeepSEA",
        "model": "DeepSEA/variantEffects",
        "environment": "kipoi-py3-keras2"
    },
    {
        "group": "DeepSEA",
        "model": "DeepSEA/predict",
        "environment": "kipoi-py3-keras2"
    },
    ...
]

Get Predictions

Method: POST

Endpoint: /get_predictions

Form-Data:

  • models: List of Strings (Format: model_name@@@model_environment)
  • One of:
    • sequences: List of objects with attributes id and seq
    • file: Input file

Example Request:

  • models: ['Basset@@@kipoi-py3-keras2', 'DeepSEA/predict@@@kipoi-py3-keras2']
  • sequences: [{"id":"[known_CEBP_binding_increase]GtoT__chr1_109817091_109818090","seq":"GTGCCTCTGGGAGGAGAGGGACTCCTGGGGGGCCTGCCCCTCATACGCCATCACCAAAAGGAAAGGACAAAGCCACACGCAGCCAGGGCTTCACACCCTTCAGGCTGCACCCGGGCAGGCCTCAGAACGGTGAGGGGCCAGGGCAAAGGGTGTGCCTCGTCCTGCCCGCACTGCCTCTCCCAGGAACTGGAAAAGCCCTGTCCGGTGAGGGGGCAGAAGGACTCAGCGCCCCTGGACCCCCAAATGCTGCATGAACACATTTTCAGGGGAGCCTGTGCCCCCAGGCGGGGGTCGGGCAGCCCCAGCCCCTCTCCTTTTCCTGGACTCTGGCCGTGCGCGGCAGCCCAGGTGTTTGCTCAGTTGCTGACCCAAAAGTGCTTCATTTTTCGTGCCCGCCCCGCGCCCCGGGCAGGCCAGTCATGTGTTAAGTTGCGCTTCTTTGCTGTGATGTGGGTGGGGGAGGAAGAGTAAACACAGTGCTGGCTCGGCTGCCCTGAGGTTGCTCAATCAAGCACAGGTTTCAAGTCTGGGTTCTGGTGTCCACTCACCCACCCCACCCCCCAAAATCAGACAAATGCTACTTTGTCTAACCTGCTGTGGCCTCTGAGACATGTTCTATTTTTAACCCCTTCTTGGAATTGGCTCTCTTCTTCAAAGGACCAGGTCCTGTTCCTCTTTCTCCCCGACTCCACCCCAGCTCCCTGTGAAGAGAGAGTTAATATATTTGTTTTATTTATTTGCTTTTTGTGTTGGGATGGGTTCGTGTCCAGTCCCGGGGGTCTGATATGGCCATCACAGGCTGGGTGTTCCCAGCAGCCCTGGCTTGGGGGCTTGACGCCCTTCCCCTTGCCCCAGGCCATCATCTCCCCACCTCTCCTCCCCTCTCCTCAGTTTTGCCGACTGCTTTTCATCTGAGTCACCATTTACTCCAAGCATGTATTCCAGACTTGTCACTGACTTTCCTTCTGGAGCAGGTGGCTAGAAAAAGAGGCTGTGGGCA"}]

Returns:

[
    {
        "name": "[known_CEBP_binding_increase]GtoT__chr1_109817091_109818090",
        "model": "Basset",
        "feature": "",
        "score": 0.3131888806819916,
        "normalized_score": ""
    },
    {
        "name": "[known_CEBP_binding_increase]GtoT__chr1_109817091_109818090",
        "model": "Basset",
        "feature": "",
        "score": 0.473111629486084,
        "normalized_score": ""
    },
    ...
]