From 6515abbd00df951f12eff88d1c3bce96aabdac9c Mon Sep 17 00:00:00 2001 From: DerThorsten Date: Wed, 12 Jun 2019 19:16:01 +0200 Subject: [PATCH 1/7] using py36 --- CpGenie/merged/model.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CpGenie/merged/model.yaml b/CpGenie/merged/model.yaml index 0f1173414..d0920fb31 100644 --- a/CpGenie/merged/model.yaml +++ b/CpGenie/merged/model.yaml @@ -36,7 +36,7 @@ default_dataloader: dummy_axis: 1 dependencies: conda: - - python=3.5 + - python=3.6 - h5py - tensorflow>=1.10.0 - keras==1.2.2 From e32cf02a8ab43edbf17b31bc1d1d634680b5d47d Mon Sep 17 00:00:00 2001 From: DerThorsten Date: Wed, 12 Jun 2019 19:32:02 +0200 Subject: [PATCH 2/7] newer kipoi --- config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config.yaml b/config.yaml index d5b3d9190..d0a9ad16f 100644 --- a/config.yaml +++ b/config.yaml @@ -5,4 +5,4 @@ test: dependencies: pip: - kipoi>=0.6.9 + kipoi>=0.6.14 From 5b1deab4f3aad9f404dacabaf0de02961d3fc3e3 Mon Sep 17 00:00:00 2001 From: DerThorsten Date: Thu, 13 Jun 2019 10:02:31 +0200 Subject: [PATCH 3/7] reseting graph backend --- CpGenie/merged/model.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/CpGenie/merged/model.py b/CpGenie/merged/model.py index a9d775f5a..19e57a7ea 100644 --- a/CpGenie/merged/model.py +++ b/CpGenie/merged/model.py @@ -27,6 +27,10 @@ def read_txt(file_path): class MergedModel(BaseModel): def __init__(self): + + from keras import backend as K + K.clear_session() + self.model_names = read_txt("models.txt") # hard-code the path to this models # if we'd use `source='dir'`, then the models wouldn't From 4ea591703b5588dc5702e0eabe50e4a9c2e9fc94 Mon Sep 17 00:00:00 2001 From: DerThorsten Date: Thu, 13 Jun 2019 11:02:50 +0200 Subject: [PATCH 4/7] using most recent kipoi --- config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config.yaml b/config.yaml index d0a9ad16f..f7a454de2 100644 --- a/config.yaml +++ b/config.yaml @@ -5,4 +5,4 @@ test: dependencies: pip: - kipoi>=0.6.14 + kipoi>=0.6.15 From a3329d58ffed2ceec961fe35bc79c8e932265328 Mon Sep 17 00:00:00 2001 From: DerThorsten Date: Thu, 13 Jun 2019 11:19:15 +0200 Subject: [PATCH 5/7] using recet kipoi --- config.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config.yaml b/config.yaml index f7a454de2..e42faf02e 100644 --- a/config.yaml +++ b/config.yaml @@ -5,4 +5,4 @@ test: dependencies: pip: - kipoi>=0.6.15 + kipoi>=0.6.16 From 1d44be7b0ce5ee0fd1fa51c25b44a03d8961a485 Mon Sep 17 00:00:00 2001 From: DerThorsten Date: Thu, 13 Jun 2019 11:23:22 +0200 Subject: [PATCH 6/7] trigger From 1f1e33456e4c12fe4698a6d8e0e8415039242a08 Mon Sep 17 00:00:00 2001 From: DerThorsten Date: Thu, 13 Jun 2019 11:41:48 +0200 Subject: [PATCH 7/7] trigger