From d253033836e024c2b76d76a8f9f2c68d3e091900 Mon Sep 17 00:00:00 2001 From: Haimasree Date: Fri, 12 Nov 2021 18:02:22 +0100 Subject: [PATCH] Fixing deepcpgdna singularity container info --- .circleci/config.yml | 4 ++-- .circleci/setup.sh | 2 +- shared/containers/model-to-singularity.json | 6 +++--- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 1786c203b..e1dc522eb 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -203,8 +203,8 @@ workflows: - test_all_models_singularity: matrix: parameters: - num_of_shards: [4] - shard_id: [0, 1, 2, 3] + num_of_shards: [12] + shard_id: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11] #TODO: Switch back to 4 filters: branches: only: diff --git a/.circleci/setup.sh b/.circleci/setup.sh index 9bba86009..37b80b50f 100755 --- a/.circleci/setup.sh +++ b/.circleci/setup.sh @@ -47,7 +47,7 @@ echo "Installing Kipoi." # install kipoi and others from the master branch for now pip install git+https://github.com/kipoi/kipoi-utils.git pip install git+https://github.com/kipoi/kipoi-conda.git -pip install git+https://github.com/kipoi/kipoi.git@add-singularity +pip install git+https://github.com/kipoi/kipoi.git # pip install kipoi # fi diff --git a/shared/containers/model-to-singularity.json b/shared/containers/model-to-singularity.json index 93f662a1c..616ecfa02 100644 --- a/shared/containers/model-to-singularity.json +++ b/shared/containers/model-to-singularity.json @@ -1,8 +1,8 @@ { "DeepCpG_DNA": { - "url": "https://zenodo.org/record/5644007/files/kipoi-docker_sharedpy3keras2.sif?download=1", - "name": "kipoi-docker_sharedpy3keras2", - "md5": "0e5354145f54c2c8c7efc3bb265aebac" + "url": "https://zenodo.org/record/5644005/files/kipoi-docker_sharedpy3keras1.2.sif?download=1", + "name": "kipoi-docker_sharedpy3keras1.2", + "md5": "cd748bae471b6af0b2cdaecca1e1c6ac" }, "CpGenie": { "url": "https://zenodo.org/record/5644005/files/kipoi-docker_sharedpy3keras1.2.sif?download=1",