requirements.txt

accelerate==0.29.3
beartype==0.18.5
bio==1.7.0
biopython==1.83
biothings-client==0.3.1
certifi==2024.2.2
charset-normalizer==3.3.2
contourpy==1.2.1
cycler==0.12.1
einops==0.8.0
ema-pytorch==0.4.5
filelock==3.14.0
fonttools==4.51.0
fsspec==2024.3.1
gprofiler-official==1.0.0
huggingface-hub==0.22.2
idna==3.7
imageio==2.34.1
Jinja2==3.1.3
kiwisolver==1.4.5
logomaker==0.8
MarkupSafe==2.1.5
matplotlib==3.8.4
mpmath==1.3.0
mygene==3.2.2
networkx==3.3
numpy==1.26.4
nvidia-cublas-cu12==12.1.3.1
nvidia-cuda-cupti-cu12==12.1.105
nvidia-cuda-nvrtc-cu12==12.1.105
nvidia-cuda-runtime-cu12==12.1.105
nvidia-cudnn-cu12==8.9.2.26
nvidia-cufft-cu12==11.0.2.54
nvidia-curand-cu12==10.3.2.106
nvidia-cusolver-cu12==11.4.5.107
nvidia-cusparse-cu12==12.1.0.106
nvidia-nccl-cu12==2.20.5
nvidia-nvjitlink-cu12==12.4.127
nvidia-nvtx-cu12==12.1.105
packaging==24.0
pandas==2.2.2
pillow==10.3.0
platformdirs==4.2.1
pooch==1.8.1
psutil==5.9.8
pyparsing==3.1.2
python-dateutil==2.9.0.post0
pytz==2024.1
PyYAML==6.0.1
requests==2.31.0
safetensors==0.4.3
six==1.16.0
sympy==1.12
torch==2.3.0
tqdm==4.66.2
triton==2.3.0
typing_extensions==4.11.0
tzdata==2024.1
urllib3==2.2.1