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issues about multiple alleles and phasing sites #102

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zy66-su opened this issue Apr 7, 2024 · 0 comments
Open

issues about multiple alleles and phasing sites #102

zy66-su opened this issue Apr 7, 2024 · 0 comments
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help wanted Extra attention is needed

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@zy66-su
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zy66-su commented Apr 7, 2024

Hello, thank you for developing such a great software. I noticed two issues during my use of the manual: 1. GATK4 also generates multiple alleles, which can interfere with calculations ?
2. In the results generated by GATK4, there are both 0/1 and 0|1. Will the loci of this 0|1 haplotype typing interfere with the results ?
@zy66-su zy66-su added the help wanted Extra attention is needed label Apr 7, 2024
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