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There needs to be an additional constraint that parses (using zlibs gzread or the included quagzipfile.h) the first 4 bases from the bgzipped file and ensures it equals [B][A][M][\1]
kind regards,
Youri
The text was updated successfully, but these errors were encountered:
Hi there,
I found a small error in the format detection that marks a bgzipped fastq as unaligned bam.
At the following line:
FastQt/utils/format_detection.cpp
Line 140 in 07da1be
There needs to be an additional constraint that parses (using zlibs gzread or the included quagzipfile.h) the first 4 bases from the bgzipped file and ensures it equals
[B][A][M][\1]
kind regards,
Youri
The text was updated successfully, but these errors were encountered: