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How to generate complex with ethylene as ligand #13

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iuhgnor opened this issue Apr 24, 2023 · 2 comments
Open

How to generate complex with ethylene as ligand #13

iuhgnor opened this issue Apr 24, 2023 · 2 comments
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Enhancement Software Enhancement Request

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@iuhgnor
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iuhgnor commented Apr 24, 2023

Could Architector generate the structure of complex with ethylene as ligand?

@iuhgnor iuhgnor closed this as completed Apr 25, 2023
@mgt16-LANL mgt16-LANL reopened this Jul 12, 2023
@mgt16-LANL
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"Edge" bound cases like ethylene are particularly tricky to handle within architector's design thusfar. This issue is under development.

@mgt16-LANL mgt16-LANL added the Enhancement Software Enhancement Request label Jul 19, 2023
@iuhgnor
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iuhgnor commented Jul 20, 2023

I tried to generate structures with octene as ligand by assigning the first C atom of C=C as the coordinate atom. Those structures seem good enough to perform DFT optimization. This way isn't good but useful for my case.

octene_smi = 'C=CCCCCCC'
octene_ligand_dict = {
    'smiles': octene_smi,
    'coordList': [0],
    'ligType': 'mono'
}

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