From cb2b132b543b4493e1f6e021c86ca9466aa412a1 Mon Sep 17 00:00:00 2001
From: Lukas Gessl <lukas.gessl@stud.uni-regensburg.de>
Date: Tue, 21 Nov 2023 16:34:20 +0000
Subject: [PATCH] dplyr::all_of()

---
 R/read.R | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/R/read.R b/R/read.R
index e52e8ea..32c2996 100644
--- a/R/read.R
+++ b/R/read.R
@@ -45,14 +45,14 @@ read <- function(
     # expression to matrix
     gene_names <- res[["expr"]][[gene_id_col]]
     expr_mat <- expr_tbl |>
-        dplyr::select(!all_of(gene_id_col)) |>
+        dplyr::select(!dplyr::all_of(gene_id_col)) |>
         as.matrix() |> 
         t()
     colnames(expr_mat) <- gene_names
 
     # pheno: move patient ids into first column
     pheno_tbl <- pheno_tbl |>
-        dplyr::relocate(all_of(patient_id_col))
+        dplyr::relocate(dplyr::all_of(patient_id_col))
 
     return(res)
 }
\ No newline at end of file