diff --git a/poetry.lock b/poetry.lock
index 7b87a86..80a6b2e 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,10 +1,9 @@
-# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand.
[[package]]
name = "airium"
version = "0.2.6"
description = "Easy and quick html builder with natural syntax correspondence (python->html). No templates needed. Serves pure pythonic library with no dependencies."
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -20,7 +19,6 @@ parse = ["beautifulsoup4 (>=4.10.0,<5.0)", "requests (>=2.12.0,<3)"]
name = "alabaster"
version = "0.7.16"
description = "A light, configurable Sphinx theme"
-category = "dev"
optional = false
python-versions = ">=3.9"
files = [
@@ -30,21 +28,19 @@ files = [
[[package]]
name = "annotated-types"
-version = "0.6.0"
+version = "0.7.0"
description = "Reusable constraint types to use with typing.Annotated"
-category = "main"
optional = false
python-versions = ">=3.8"
files = [
- {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
- {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
+ {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"},
+ {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
]
[[package]]
name = "antlr4-python3-runtime"
version = "4.9.3"
description = "ANTLR 4.9.3 runtime for Python 3.7"
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -53,14 +49,13 @@ files = [
[[package]]
name = "anyio"
-version = "4.3.0"
+version = "4.4.0"
description = "High level compatibility layer for multiple asynchronous event loop implementations"
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
- {file = "anyio-4.3.0-py3-none-any.whl", hash = "sha256:048e05d0f6caeed70d731f3db756d35dcc1f35747c8c403364a8332c630441b8"},
- {file = "anyio-4.3.0.tar.gz", hash = "sha256:f75253795a87df48568485fd18cdd2a3fa5c4f7c5be8e5e36637733fce06fed6"},
+ {file = "anyio-4.4.0-py3-none-any.whl", hash = "sha256:c1b2d8f46a8a812513012e1107cb0e68c17159a7a594208005a57dc776e1bdc7"},
+ {file = "anyio-4.4.0.tar.gz", hash = "sha256:5aadc6a1bbb7cdb0bede386cac5e2940f5e2ff3aa20277e991cf028e0585ce94"},
]
[package.dependencies]
@@ -78,7 +73,6 @@ trio = ["trio (>=0.23)"]
name = "appdirs"
version = "1.4.4"
description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -90,7 +84,6 @@ files = [
name = "appnope"
version = "0.1.4"
description = "Disable App Nap on macOS >= 10.9"
-category = "dev"
optional = false
python-versions = ">=3.6"
files = [
@@ -102,7 +95,6 @@ files = [
name = "argon2-cffi"
version = "23.1.0"
description = "Argon2 for Python"
-category = "dev"
optional = false
python-versions = ">=3.7"
files = [
@@ -123,7 +115,6 @@ typing = ["mypy"]
name = "argon2-cffi-bindings"
version = "21.2.0"
description = "Low-level CFFI bindings for Argon2"
-category = "dev"
optional = false
python-versions = ">=3.6"
files = [
@@ -161,7 +152,6 @@ tests = ["pytest"]
name = "arrow"
version = "1.3.0"
description = "Better dates & times for Python"
-category = "main"
optional = false
python-versions = ">=3.8"
files = [
@@ -175,13 +165,12 @@ types-python-dateutil = ">=2.8.10"
[package.extras]
doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
-test = ["dateparser (>=1.0.0,<2.0.0)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (>=3.0.0,<4.0.0)"]
+test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
[[package]]
name = "asttokens"
version = "2.4.1"
description = "Annotate AST trees with source code positions"
-category = "dev"
optional = false
python-versions = "*"
files = [
@@ -200,7 +189,6 @@ test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"]
name = "async-lru"
version = "2.0.4"
description = "Simple LRU cache for asyncio"
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
@@ -215,7 +203,6 @@ typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""}
name = "attrs"
version = "23.2.0"
description = "Classes Without Boilerplate"
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -233,14 +220,13 @@ tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "p
[[package]]
name = "babel"
-version = "2.14.0"
+version = "2.15.0"
description = "Internationalization utilities"
-category = "main"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
files = [
- {file = "Babel-2.14.0-py3-none-any.whl", hash = "sha256:efb1a25b7118e67ce3a259bed20545c29cb68be8ad2c784c83689981b7a57287"},
- {file = "Babel-2.14.0.tar.gz", hash = "sha256:6919867db036398ba21eb5c7a0f6b28ab8cbc3ae7a73a44ebe34ae74a4e7d363"},
+ {file = "Babel-2.15.0-py3-none-any.whl", hash = "sha256:08706bdad8d0a3413266ab61bd6c34d0c28d6e1e7badf40a2cebe67644e2e1fb"},
+ {file = "babel-2.15.0.tar.gz", hash = "sha256:8daf0e265d05768bc6c7a314cf1321e9a123afc328cc635c18622a2f30a04413"},
]
[package.extras]
@@ -248,21 +234,19 @@ dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
[[package]]
name = "bcp47"
-version = "0.0.4"
+version = "0.1.0"
description = "Language tags made easy"
-category = "main"
optional = false
python-versions = "*"
files = [
- {file = "bcp47-0.0.4-py3-none-any.whl", hash = "sha256:309d3bbaef8d6c9ac59d37ba2167cc6620b4e7467ec8f1e09641b659bb1c0c6d"},
- {file = "bcp47-0.0.4.tar.gz", hash = "sha256:4878d2f3e697ef39ef3891a147280705e4377d5a8d7eb0702129b8d4a3718702"},
+ {file = "bcp47-0.1.0-py3-none-any.whl", hash = "sha256:a567b7fe881c900916a9db62ac8f792370c7ddf2664e601b74eeed35d8758aa5"},
+ {file = "bcp47-0.1.0.tar.gz", hash = "sha256:37cc7a03fd696149ebfe7de785c5bad473f911eddac8415cf479584049cf03d5"},
]
[[package]]
name = "beautifulsoup4"
version = "4.12.3"
description = "Screen-scraping library"
-category = "main"
optional = false
python-versions = ">=3.6.0"
files = [
@@ -282,14 +266,13 @@ lxml = ["lxml"]
[[package]]
name = "bioregistry"
-version = "0.10.163"
+version = "0.11.10"
description = "Integrated registry of biological databases and nomenclatures"
-category = "main"
optional = false
python-versions = ">=3.8"
files = [
- {file = "bioregistry-0.10.163-py3-none-any.whl", hash = "sha256:49064a3c99f8538bbd0cfbf3b5e0fdb1a1ae65a3772059e38b091bd479f72cef"},
- {file = "bioregistry-0.10.163.tar.gz", hash = "sha256:2c0c5c03d7094e3507f134101cfe6698ae958897f206baf06725a529f00eaac1"},
+ {file = "bioregistry-0.11.10-py3-none-any.whl", hash = "sha256:0af02ca586024f3791364dae2c04e03156e01df9b6d7eb7f3cb6be5682a40a2d"},
+ {file = "bioregistry-0.11.10.tar.gz", hash = "sha256:d3e155ba38d88f5e4a84a2d337c33109f3434f6b2e64a285eba14817ed5c4492"},
]
[package.dependencies]
@@ -304,7 +287,7 @@ tqdm = "*"
[package.extras]
align = ["beautifulsoup4", "class-resolver", "defusedxml", "fairsharing-client (>=0.1.0)", "pandas", "pyyaml", "tabulate"]
charts = ["jinja2", "matplotlib", "matplotlib-venn", "pandas", "seaborn"]
-docs = ["autodoc-pydantic", "sphinx", "sphinx-automodapi", "sphinx-click", "sphinx-rtd-theme"]
+docs = ["autodoc-pydantic", "sphinx (<7.3)", "sphinx-automodapi", "sphinx-click", "sphinx-rtd-theme"]
export = ["ndex2", "pyyaml", "rdflib", "rdflib-jsonld"]
gha = ["more-itertools"]
health = ["click-default-group", "jinja2", "pandas", "pyyaml", "tabulate"]
@@ -315,7 +298,6 @@ web = ["bootstrap-flask (<=2.0.0)", "curies[fastapi]", "fastapi", "flask (<2.2.4
name = "bleach"
version = "6.1.0"
description = "An easy safelist-based HTML-sanitizing tool."
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
@@ -334,7 +316,6 @@ css = ["tinycss2 (>=1.1.0,<1.3)"]
name = "cachetools"
version = "5.3.3"
description = "Extensible memoizing collections and decorators"
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -346,7 +327,6 @@ files = [
name = "cattrs"
version = "23.2.3"
description = "Composable complex class support for attrs and dataclasses."
-category = "main"
optional = false
python-versions = ">=3.8"
files = [
@@ -370,21 +350,19 @@ ujson = ["ujson (>=5.7.0)"]
[[package]]
name = "certifi"
-version = "2024.2.2"
+version = "2024.6.2"
description = "Python package for providing Mozilla's CA Bundle."
-category = "main"
optional = false
python-versions = ">=3.6"
files = [
- {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
- {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"},
+ {file = "certifi-2024.6.2-py3-none-any.whl", hash = "sha256:ddc6c8ce995e6987e7faf5e3f1b02b302836a0e5d98ece18392cb1a36c72ad56"},
+ {file = "certifi-2024.6.2.tar.gz", hash = "sha256:3cd43f1c6fa7dedc5899d69d3ad0398fd018ad1a17fba83ddaf78aa46c747516"},
]
[[package]]
name = "cffi"
version = "1.16.0"
description = "Foreign Function Interface for Python calling C code."
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
@@ -449,7 +427,6 @@ pycparser = "*"
name = "cfgraph"
version = "0.2.1"
description = "rdflib collections flattening graph"
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -463,7 +440,6 @@ rdflib = ">=0.4.2"
name = "chardet"
version = "5.2.0"
description = "Universal encoding detector for Python 3"
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -475,7 +451,6 @@ files = [
name = "charset-normalizer"
version = "3.3.2"
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-category = "main"
optional = false
python-versions = ">=3.7.0"
files = [
@@ -575,7 +550,6 @@ files = [
name = "class-resolver"
version = "0.4.3"
description = "Lookup and instantiate classes with style."
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -602,7 +576,6 @@ torch-geometric = ["torch", "torch-geometric", "torch-sparse"]
name = "click"
version = "8.1.7"
description = "Composable command line interface toolkit"
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -617,7 +590,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
name = "click-default-group"
version = "1.2.4"
description = "click_default_group"
-category = "main"
optional = false
python-versions = ">=2.7"
files = [
@@ -635,7 +607,6 @@ test = ["pytest"]
name = "click-log"
version = "0.4.0"
description = "Logging integration for Click"
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -650,7 +621,6 @@ click = "*"
name = "colorama"
version = "0.4.6"
description = "Cross-platform colored terminal text."
-category = "main"
optional = false
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
files = [
@@ -660,14 +630,13 @@ files = [
[[package]]
name = "comm"
-version = "0.2.1"
+version = "0.2.2"
description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc."
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
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- {file = "comm-0.2.1.tar.gz", hash = "sha256:0bc91edae1344d39d3661dcbc36937181fdaddb304790458f8b044dbc064b89a"},
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+ {file = "comm-0.2.2.tar.gz", hash = "sha256:3fd7a84065306e07bea1773df6eb8282de51ba82f77c72f9c85716ab11fe980e"},
]
[package.dependencies]
@@ -678,14 +647,13 @@ test = ["pytest"]
[[package]]
name = "curies"
-version = "0.7.7"
+version = "0.7.9"
description = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
-category = "main"
optional = false
python-versions = ">=3.8"
files = [
- {file = "curies-0.7.7-py3-none-any.whl", hash = "sha256:609de3e8cdf39f410e8f4d9f06eb7df379465860f4fb441bf0e79672430f8e2a"},
- {file = "curies-0.7.7.tar.gz", hash = "sha256:a8d674029f906fb9c3564eafa0862ce96725932bd801fa751e076265b111cb34"},
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[package.dependencies]
@@ -705,7 +673,6 @@ tests = ["coverage", "pytest"]
name = "daff"
version = "1.3.46"
description = "Diff and patch tables"
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -716,7 +683,6 @@ files = [
name = "debugpy"
version = "1.8.1"
description = "An implementation of the Debug Adapter Protocol for Python"
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
@@ -748,7 +714,6 @@ files = [
name = "decorator"
version = "5.1.1"
description = "Decorators for Humans"
-category = "dev"
optional = false
python-versions = ">=3.5"
files = [
@@ -760,7 +725,6 @@ files = [
name = "defusedxml"
version = "0.7.1"
description = "XML bomb protection for Python stdlib modules"
-category = "dev"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
files = [
@@ -772,7 +736,6 @@ files = [
name = "deprecated"
version = "1.2.14"
description = "Python @deprecated decorator to deprecate old python classes, functions or methods."
-category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
files = [
@@ -790,7 +753,6 @@ dev = ["PyTest", "PyTest-Cov", "bump2version (<1)", "sphinx (<2)", "tox"]
name = "deprecation"
version = "2.1.0"
description = "A library to handle automated deprecations"
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -805,7 +767,6 @@ packaging = "*"
name = "distro"
version = "1.9.0"
description = "Distro - an OS platform information API"
-category = "dev"
optional = false
python-versions = ">=3.6"
files = [
@@ -817,7 +778,6 @@ files = [
name = "docopt"
version = "0.6.2"
description = "Pythonic argument parser, that will make you smile"
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -826,89 +786,75 @@ files = [
[[package]]
name = "docutils"
-version = "0.20.1"
+version = "0.21.2"
description = "Docutils -- Python Documentation Utilities"
-category = "dev"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.9"
files = [
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]
[[package]]
name = "duckdb"
-version = "0.10.1"
+version = "0.10.3"
description = "DuckDB in-process database"
-category = "main"
optional = false
python-versions = ">=3.7.0"
files = [
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optional = false
python-versions = "*"
files = [
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@@ -985,7 +927,6 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc
name = "fastobo"
version = "0.12.3"
description = "Faultless AST for Open Biomedical Ontologies in Python."
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -1041,7 +982,6 @@ files = [
name = "fqdn"
version = "1.5.1"
description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
-category = "main"
optional = false
python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
files = [
@@ -1053,7 +993,6 @@ files = [
name = "funowl"
version = "0.2.3"
description = "Python rendering of the OWL Functional syntax"
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -1073,7 +1012,6 @@ rfc3987 = "*"
name = "ghp-import"
version = "2.1.0"
description = "Copy your docs directly to the gh-pages branch."
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -1091,7 +1029,6 @@ dev = ["flake8", "markdown", "twine", "wheel"]
name = "google"
version = "3.0.0"
description = "Python bindings to the Google search engine."
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -1104,20 +1041,20 @@ beautifulsoup4 = "*"
[[package]]
name = "google-api-core"
-version = "2.17.1"
+version = "2.19.1"
description = "Google API client core library"
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
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googleapis-common-protos = ">=1.56.2,<2.0.dev0"
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+proto-plus = ">=1.22.3,<2.0.0dev"
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requests = ">=2.18.0,<3.0.0.dev0"
[package.extras]
@@ -1127,33 +1064,31 @@ grpcio-gcp = ["grpcio-gcp (>=0.2.2,<1.0.dev0)"]
[[package]]
name = "google-api-python-client"
-version = "2.121.0"
+version = "2.134.0"
description = "Google API Client Library for Python"
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
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-google-auth-httplib2 = ">=0.1.0"
-httplib2 = ">=0.15.0,<1.dev0"
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+httplib2 = ">=0.19.0,<1.dev0"
uritemplate = ">=3.0.1,<5"
[[package]]
name = "google-auth"
-version = "2.28.1"
+version = "2.30.0"
description = "Google Authentication Library"
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
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@@ -1172,7 +1107,6 @@ requests = ["requests (>=2.20.0,<3.0.0.dev0)"]
name = "google-auth-httplib2"
version = "0.2.0"
description = "Google Authentication Library: httplib2 transport"
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -1188,7 +1122,6 @@ httplib2 = ">=0.19.0"
name = "google-auth-oauthlib"
version = "1.2.0"
description = "Google Authentication Library"
-category = "main"
optional = false
python-versions = ">=3.6"
files = [
@@ -1205,44 +1138,41 @@ tool = ["click (>=6.0.0)"]
[[package]]
name = "googleapis-common-protos"
-version = "1.62.0"
+version = "1.63.2"
description = "Common protobufs used in Google APIs"
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
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+protobuf = ">=3.20.2,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<6.0.0.dev0"
[package.extras]
grpc = ["grpcio (>=1.44.0,<2.0.0.dev0)"]
[[package]]
name = "graphviz"
-version = "0.20.1"
+version = "0.20.3"
description = "Simple Python interface for Graphviz"
-category = "main"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
files = [
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-test = ["coverage", "mock (>=4)", "pytest (>=7)", "pytest-cov", "pytest-mock (>=3)"]
+docs = ["sphinx (>=5,<7)", "sphinx-autodoc-typehints", "sphinx-rtd-theme"]
+test = ["coverage", "pytest (>=7,<8.1)", "pytest-cov", "pytest-mock (>=3)"]
[[package]]
name = "greenlet"
version = "3.0.3"
description = "Lightweight in-process concurrent programming"
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -1312,31 +1242,28 @@ test = ["objgraph", "psutil"]
[[package]]
name = "gspread"
-version = "6.0.2"
+version = "6.1.2"
description = "Google Spreadsheets Python API"
-category = "main"
optional = false
python-versions = ">=3.8"
files = [
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google-auth = ">=1.12.0"
google-auth-oauthlib = ">=0.4.1"
-StrEnum = "0.4.15"
[[package]]
name = "gspread-formatting"
-version = "1.1.2"
+version = "1.2.0"
description = "Complete Google Sheets formatting support for gspread worksheets"
-category = "main"
optional = false
python-versions = "*"
files = [
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@@ -1346,7 +1273,6 @@ gspread = ">=3.0.0"
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version = "0.14.0"
description = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1"
-category = "dev"
optional = false
python-versions = ">=3.7"
files = [
@@ -1358,7 +1284,6 @@ files = [
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version = "0.9.1"
description = "Honey Badger reader - a generic file/url/string open and read tool"
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optional = false
python-versions = ">=3.7"
files = [
@@ -1368,14 +1293,13 @@ files = [
[[package]]
name = "httpcore"
-version = "1.0.4"
+version = "1.0.5"
description = "A minimal low-level HTTP client."
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
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@@ -1385,14 +1309,13 @@ h11 = ">=0.13,<0.15"
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http2 = ["h2 (>=3,<5)"]
-socks = ["socksio (>=1.0.0,<2.0.0)"]
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+socks = ["socksio (==1.*)"]
+trio = ["trio (>=0.22.0,<0.26.0)"]
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version = "0.22.0"
description = "A comprehensive HTTP client library."
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optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
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version = "0.27.0"
description = "The next generation HTTP client."
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optional = false
python-versions = ">=3.8"
files = [
@@ -1418,132 +1340,134 @@ files = [
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anyio = "*"
certifi = "*"
-httpcore = ">=1.0.0,<2.0.0"
+httpcore = "==1.*"
idna = "*"
sniffio = "*"
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http2 = ["h2 (>=3,<5)"]
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+socks = ["socksio (==1.*)"]
[[package]]
name = "idna"
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+version = "3.7"
description = "Internationalized Domain Names in Applications (IDNA)"
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python-versions = ">=3.5"
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name = "ijson"
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+version = "3.3.0"
description = "Iterative JSON parser with standard Python iterator interfaces"
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optional = false
python-versions = "*"
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+ {file = "inflect-7.3.0.tar.gz", hash = "sha256:27264bb8992cab2be3c50772ecf7a79492c6f95e16e15002e6023001d2d639c2"},
]
[package.dependencies]
-pydantic = ">=1.9.1"
-typing-extensions = "*"
+more-itertools = "*"
+typeguard = ">=4.0.1"
[package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["pygments", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+test = ["pygments", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
[[package]]
name = "iniconfig"
version = "2.0.0"
description = "brain-dead simple config-ini parsing"
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -1624,14 +1544,13 @@ files = [
[[package]]
name = "ipykernel"
-version = "6.29.3"
+version = "6.29.4"
description = "IPython Kernel for Jupyter"
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
- {file = "ipykernel-6.29.3-py3-none-any.whl", hash = "sha256:5aa086a4175b0229d4eca211e181fb473ea78ffd9869af36ba7694c947302a21"},
- {file = "ipykernel-6.29.3.tar.gz", hash = "sha256:e14c250d1f9ea3989490225cc1a542781b095a18a19447fcf2b5eaf7d0ac5bd2"},
+ {file = "ipykernel-6.29.4-py3-none-any.whl", hash = "sha256:1181e653d95c6808039c509ef8e67c4126b3b3af7781496c7cbfb5ed938a27da"},
+ {file = "ipykernel-6.29.4.tar.gz", hash = "sha256:3d44070060f9475ac2092b760123fadf105d2e2493c24848b6691a7c4f42af5c"},
]
[package.dependencies]
@@ -1640,7 +1559,7 @@ comm = ">=0.1.1"
debugpy = ">=1.6.5"
ipython = ">=7.23.1"
jupyter-client = ">=6.1.12"
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
matplotlib-inline = ">=0.1"
nest-asyncio = "*"
packaging = "*"
@@ -1660,7 +1579,6 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio
name = "ipython"
version = "8.18.1"
description = "IPython: Productive Interactive Computing"
-category = "dev"
optional = false
python-versions = ">=3.9"
files = [
@@ -1696,22 +1614,21 @@ test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.22)", "pa
[[package]]
name = "ipywidgets"
-version = "8.1.2"
+version = "8.1.3"
description = "Jupyter interactive widgets"
-category = "dev"
optional = false
python-versions = ">=3.7"
files = [
- {file = "ipywidgets-8.1.2-py3-none-any.whl", hash = "sha256:bbe43850d79fb5e906b14801d6c01402857996864d1e5b6fa62dd2ee35559f60"},
- {file = "ipywidgets-8.1.2.tar.gz", hash = "sha256:d0b9b41e49bae926a866e613a39b0f0097745d2b9f1f3dd406641b4a57ec42c9"},
+ {file = "ipywidgets-8.1.3-py3-none-any.whl", hash = "sha256:efafd18f7a142248f7cb0ba890a68b96abd4d6e88ddbda483c9130d12667eaf2"},
+ {file = "ipywidgets-8.1.3.tar.gz", hash = "sha256:f5f9eeaae082b1823ce9eac2575272952f40d748893972956dc09700a6392d9c"},
]
[package.dependencies]
comm = ">=0.1.3"
ipython = ">=6.1.0"
-jupyterlab-widgets = ">=3.0.10,<3.1.0"
+jupyterlab-widgets = ">=3.0.11,<3.1.0"
traitlets = ">=4.3.1"
-widgetsnbextension = ">=4.0.10,<4.1.0"
+widgetsnbextension = ">=4.0.11,<4.1.0"
[package.extras]
test = ["ipykernel", "jsonschema", "pytest (>=3.6.0)", "pytest-cov", "pytz"]
@@ -1720,7 +1637,6 @@ test = ["ipykernel", "jsonschema", "pytest (>=3.6.0)", "pytest-cov", "pytz"]
name = "isodate"
version = "0.6.1"
description = "An ISO 8601 date/time/duration parser and formatter"
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -1735,7 +1651,6 @@ six = "*"
name = "isoduration"
version = "20.11.0"
description = "Operations with ISO 8601 durations"
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -1750,7 +1665,6 @@ arrow = ">=0.15.0"
name = "jedi"
version = "0.19.1"
description = "An autocompletion tool for Python that can be used for text editors."
-category = "dev"
optional = false
python-versions = ">=3.6"
files = [
@@ -1768,14 +1682,13 @@ testing = ["Django", "attrs", "colorama", "docopt", "pytest (<7.0.0)"]
[[package]]
name = "jinja2"
-version = "3.1.3"
+version = "3.1.4"
description = "A very fast and expressive template engine."
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
- {file = "Jinja2-3.1.3-py3-none-any.whl", hash = "sha256:7d6d50dd97d52cbc355597bd845fabfbac3f551e1f99619e39a35ce8c370b5fa"},
- {file = "Jinja2-3.1.3.tar.gz", hash = "sha256:ac8bd6544d4bb2c9792bf3a159e80bba8fda7f07e81bc3aed565432d5925ba90"},
+ {file = "jinja2-3.1.4-py3-none-any.whl", hash = "sha256:bc5dd2abb727a5319567b7a813e6a2e7318c39f4f487cfe6c89c6f9c7d25197d"},
+ {file = "jinja2-3.1.4.tar.gz", hash = "sha256:4a3aee7acbbe7303aede8e9648d13b8bf88a429282aa6122a993f0ac800cb369"},
]
[package.dependencies]
@@ -1784,26 +1697,10 @@ MarkupSafe = ">=2.0"
[package.extras]
i18n = ["Babel (>=2.7)"]
-[[package]]
-name = "jsbeautifier"
-version = "1.15.1"
-description = "JavaScript unobfuscator and beautifier."
-category = "main"
-optional = false
-python-versions = "*"
-files = [
- {file = "jsbeautifier-1.15.1.tar.gz", hash = "sha256:ebd733b560704c602d744eafc839db60a1ee9326e30a2a80c4adb8718adc1b24"},
-]
-
-[package.dependencies]
-editorconfig = ">=0.12.2"
-six = ">=1.13.0"
-
[[package]]
name = "json-flattener"
version = "0.1.9"
description = "Python library for denormalizing nested dicts or json objects to tables and back"
-category = "main"
optional = false
python-versions = ">=3.7.0"
files = [
@@ -1817,24 +1714,19 @@ pyyaml = "*"
[[package]]
name = "json5"
-version = "0.9.20"
+version = "0.9.25"
description = "A Python implementation of the JSON5 data format."
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
- {file = "json5-0.9.20-py3-none-any.whl", hash = "sha256:f623485b37fad95783233bad9352d21526709cbd9a2ec41ddc3e950fca85b701"},
- {file = "json5-0.9.20.tar.gz", hash = "sha256:20a255981244081d5aaa4adc90d31cdbf05bed1863993cbf300b8e2cd2b6de88"},
+ {file = "json5-0.9.25-py3-none-any.whl", hash = "sha256:34ed7d834b1341a86987ed52f3f76cd8ee184394906b6e22a1e0deb9ab294e8f"},
+ {file = "json5-0.9.25.tar.gz", hash = "sha256:548e41b9be043f9426776f05df8635a00fe06104ea51ed24b67f908856e151ae"},
]
-[package.extras]
-dev = ["hypothesis"]
-
[[package]]
name = "jsonasobj"
version = "1.3.1"
description = "JSON as python objects"
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -1846,7 +1738,6 @@ files = [
name = "jsonasobj2"
version = "1.0.4"
description = "JSON as python objects - version 2"
-category = "main"
optional = false
python-versions = ">=3.6"
files = [
@@ -1857,11 +1748,24 @@ files = [
[package.dependencies]
hbreader = "*"
+[[package]]
+name = "jsonlines"
+version = "4.0.0"
+description = "Library with helpers for the jsonlines file format"
+optional = false
+python-versions = ">=3.8"
+files = [
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+ {file = "jsonlines-4.0.0.tar.gz", hash = "sha256:0c6d2c09117550c089995247f605ae4cf77dd1533041d366351f6f298822ea74"},
+]
+
+[package.dependencies]
+attrs = ">=19.2.0"
+
[[package]]
name = "jsonpatch"
version = "1.33"
description = "Apply JSON-Patches (RFC 6902)"
-category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
files = [
@@ -1876,7 +1780,6 @@ jsonpointer = ">=1.9"
name = "jsonpath-ng"
version = "1.6.1"
description = "A final implementation of JSONPath for Python that aims to be standard compliant, including arithmetic and binary comparison operators and providing clear AST for metaprogramming."
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -1889,26 +1792,24 @@ ply = "*"
[[package]]
name = "jsonpointer"
-version = "2.4"
+version = "3.0.0"
description = "Identify specific nodes in a JSON document (RFC 6901)"
-category = "main"
optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
+python-versions = ">=3.7"
files = [
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- {file = "jsonpointer-2.4.tar.gz", hash = "sha256:585cee82b70211fa9e6043b7bb89db6e1aa49524340dde8ad6b63206ea689d88"},
+ {file = "jsonpointer-3.0.0-py2.py3-none-any.whl", hash = "sha256:13e088adc14fca8b6aa8177c044e12701e6ad4b28ff10e65f2267a90109c9942"},
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]
[[package]]
name = "jsonschema"
-version = "4.21.1"
+version = "4.22.0"
description = "An implementation of JSON Schema validation for Python"
-category = "main"
optional = false
python-versions = ">=3.8"
files = [
- {file = "jsonschema-4.21.1-py3-none-any.whl", hash = "sha256:7996507afae316306f9e2290407761157c6f78002dcf7419acb99822143d1c6f"},
- {file = "jsonschema-4.21.1.tar.gz", hash = "sha256:85727c00279f5fa6bedbe6238d2aa6403bedd8b4864ab11207d07df3cc1b2ee5"},
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+ {file = "jsonschema-4.22.0.tar.gz", hash = "sha256:5b22d434a45935119af990552c862e5d6d564e8f6601206b305a61fdf661a2b7"},
]
[package.dependencies]
@@ -1934,7 +1835,6 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-
name = "jsonschema-specifications"
version = "2023.12.1"
description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
-category = "main"
optional = false
python-versions = ">=3.8"
files = [
@@ -1949,7 +1849,6 @@ referencing = ">=0.31.0"
name = "jupyter"
version = "1.0.0"
description = "Jupyter metapackage. Install all the Jupyter components in one go."
-category = "dev"
optional = false
python-versions = "*"
files = [
@@ -1968,19 +1867,18 @@ qtconsole = "*"
[[package]]
name = "jupyter-client"
-version = "8.6.0"
+version = "8.6.2"
description = "Jupyter protocol implementation and client libraries"
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
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importlib-metadata = {version = ">=4.8.3", markers = "python_version < \"3.10\""}
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
python-dateutil = ">=2.8.2"
pyzmq = ">=23.0"
tornado = ">=6.2"
@@ -1988,13 +1886,12 @@ traitlets = ">=5.3"
[package.extras]
docs = ["ipykernel", "myst-parser", "pydata-sphinx-theme", "sphinx (>=4)", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"]
-test = ["coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-commit", "pytest", "pytest-cov", "pytest-jupyter[client] (>=0.4.1)", "pytest-timeout"]
+test = ["coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-commit", "pytest (<8.2.0)", "pytest-cov", "pytest-jupyter[client] (>=0.4.1)", "pytest-timeout"]
[[package]]
name = "jupyter-console"
version = "6.6.3"
description = "Jupyter terminal console"
-category = "dev"
optional = false
python-versions = ">=3.7"
files = [
@@ -2006,7 +1903,7 @@ files = [
ipykernel = ">=6.14"
ipython = "*"
jupyter-client = ">=7.0.0"
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
prompt-toolkit = ">=3.0.30"
pygments = "*"
pyzmq = ">=17"
@@ -2017,14 +1914,13 @@ test = ["flaky", "pexpect", "pytest"]
[[package]]
name = "jupyter-core"
-version = "5.7.1"
+version = "5.7.2"
description = "Jupyter core package. A base package on which Jupyter projects rely."
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
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@@ -2034,18 +1930,17 @@ traitlets = ">=5.3"
[package.extras]
docs = ["myst-parser", "pydata-sphinx-theme", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "traitlets"]
-test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
+test = ["ipykernel", "pre-commit", "pytest (<8)", "pytest-cov", "pytest-timeout"]
[[package]]
name = "jupyter-events"
-version = "0.9.0"
+version = "0.10.0"
description = "Jupyter Event System library"
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
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]
[package.dependencies]
@@ -2064,14 +1959,13 @@ test = ["click", "pre-commit", "pytest (>=7.0)", "pytest-asyncio (>=0.19.0)", "p
[[package]]
name = "jupyter-lsp"
-version = "2.2.4"
+version = "2.2.5"
description = "Multi-Language Server WebSocket proxy for Jupyter Notebook/Lab server"
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
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]
[package.dependencies]
@@ -2080,51 +1974,49 @@ jupyter-server = ">=1.1.2"
[[package]]
name = "jupyter-server"
-version = "2.13.0"
+version = "2.14.1"
description = "The backend—i.e. core services, APIs, and REST endpoints—to Jupyter web applications."
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
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+ {file = "jupyter_server-2.14.1.tar.gz", hash = "sha256:12558d158ec7a0653bf96cc272bc7ad79e0127d503b982ed144399346694f726"},
]
[package.dependencies]
anyio = ">=3.1.0"
-argon2-cffi = "*"
-jinja2 = "*"
+argon2-cffi = ">=21.1"
+jinja2 = ">=3.0.3"
jupyter-client = ">=7.4.4"
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
jupyter-events = ">=0.9.0"
-jupyter-server-terminals = "*"
+jupyter-server-terminals = ">=0.4.4"
nbconvert = ">=6.4.4"
nbformat = ">=5.3.0"
-overrides = "*"
-packaging = "*"
-prometheus-client = "*"
-pywinpty = {version = "*", markers = "os_name == \"nt\""}
+overrides = ">=5.0"
+packaging = ">=22.0"
+prometheus-client = ">=0.9"
+pywinpty = {version = ">=2.0.1", markers = "os_name == \"nt\""}
pyzmq = ">=24"
send2trash = ">=1.8.2"
terminado = ">=0.8.3"
tornado = ">=6.2.0"
traitlets = ">=5.6.0"
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name = "jupyter-server-terminals"
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description = "A Jupyter Server Extension Providing Terminals."
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python-versions = ">=3.8"
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name = "jupyterlab"
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pyshex = ">=0.7.20"
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sqlalchemy = ">=1.4.31"
watchdog = ">=0.9.0"
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cssselect = ["cssselect (>=0.7)"]
+html-clean = ["lxml-html-clean"]
html5 = ["html5lib"]
htmlsoup = ["BeautifulSoup4"]
-source = ["Cython (>=3.0.7)"]
+source = ["Cython (>=3.0.10)"]
[[package]]
name = "markdown"
-version = "3.5.2"
+version = "3.6"
description = "Python implementation of John Gruber's Markdown."
-category = "main"
optional = false
python-versions = ">=3.8"
files = [
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]
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@@ -2520,7 +2466,6 @@ testing = ["coverage", "pyyaml"]
name = "markdown-it-py"
version = "3.0.0"
description = "Python port of markdown-it. Markdown parsing, done right!"
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
@@ -2545,7 +2490,6 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
name = "markupsafe"
version = "2.1.5"
description = "Safely add untrusted strings to HTML/XML markup."
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -2613,14 +2557,13 @@ files = [
[[package]]
name = "matplotlib-inline"
-version = "0.1.6"
+version = "0.1.7"
description = "Inline Matplotlib backend for Jupyter"
-category = "dev"
optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.8"
files = [
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]
[package.dependencies]
@@ -2628,14 +2571,13 @@ traitlets = "*"
[[package]]
name = "mdit-py-plugins"
-version = "0.4.0"
+version = "0.4.1"
description = "Collection of plugins for markdown-it-py"
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
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+ {file = "mdit_py_plugins-0.4.1.tar.gz", hash = "sha256:834b8ac23d1cd60cec703646ffd22ae97b7955a6d596eb1d304be1e251ae499c"},
]
[package.dependencies]
@@ -2650,7 +2592,6 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
name = "mdurl"
version = "0.1.2"
description = "Markdown URL utilities"
-category = "dev"
optional = false
python-versions = ">=3.7"
files = [
@@ -2662,7 +2603,6 @@ files = [
name = "mergedeep"
version = "1.3.4"
description = "A deep merge function for 🐍."
-category = "main"
optional = false
python-versions = ">=3.6"
files = [
@@ -2674,7 +2614,6 @@ files = [
name = "mistune"
version = "3.0.2"
description = "A sane and fast Markdown parser with useful plugins and renderers"
-category = "dev"
optional = false
python-versions = ">=3.7"
files = [
@@ -2684,105 +2623,56 @@ files = [
[[package]]
name = "mkdocs"
-version = "1.5.3"
+version = "1.6.0"
description = "Project documentation with Markdown."
-category = "main"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
files = [
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+ {file = "mkdocs-1.6.0-py3-none-any.whl", hash = "sha256:1eb5cb7676b7d89323e62b56235010216319217d4af5ddc543a91beb8d125ea7"},
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click = ">=7.0"
colorama = {version = ">=0.4", markers = "platform_system == \"Windows\""}
ghp-import = ">=1.0"
-importlib-metadata = {version = ">=4.3", markers = "python_version < \"3.10\""}
+importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
jinja2 = ">=2.11.1"
-markdown = ">=3.2.1"
+markdown = ">=3.3.6"
markupsafe = ">=2.0.1"
mergedeep = ">=1.3.4"
+mkdocs-get-deps = ">=0.2.0"
packaging = ">=20.5"
pathspec = ">=0.11.1"
-platformdirs = ">=2.2.0"
pyyaml = ">=5.1"
pyyaml-env-tag = ">=0.1"
watchdog = ">=2.0"
[package.extras]
i18n = ["babel (>=2.9.0)"]
-min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.3)", "jinja2 (==2.11.1)", "markdown (==3.2.1)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "packaging (==20.5)", "pathspec (==0.11.1)", "platformdirs (==2.2.0)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "typing-extensions (==3.10)", "watchdog (==2.0)"]
+min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.4)", "jinja2 (==2.11.1)", "markdown (==3.3.6)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "mkdocs-get-deps (==0.2.0)", "packaging (==20.5)", "pathspec (==0.11.1)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "watchdog (==2.0)"]
[[package]]
-name = "mkdocs-material"
-version = "9.5.12"
-description = "Documentation that simply works"
-category = "main"
+name = "mkdocs-get-deps"
+version = "0.2.0"
+description = "MkDocs extension that lists all dependencies according to a mkdocs.yml file"
optional = false
python-versions = ">=3.8"
files = [
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-markdown = ">=3.2,<4.0"
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-pymdown-extensions = ">=10.2,<11.0"
-regex = ">=2022.4"
-requests = ">=2.26,<3.0"
-
-[package.extras]
-git = ["mkdocs-git-committers-plugin-2 (>=1.1,<2.0)", "mkdocs-git-revision-date-localized-plugin (>=1.2.4,<2.0)"]
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-
-[[package]]
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-version = "1.3.1"
-description = "Extension pack for Python Markdown and MkDocs Material."
-category = "main"
-optional = false
-python-versions = ">=3.8"
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-category = "main"
-optional = false
-python-versions = ">=3.5"
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-
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-jsbeautifier = "*"
-mkdocs = ">=1.0.4"
-mkdocs-material = "*"
-pymdown-extensions = ">=8.0"
-pyyaml = "*"
-requests = "*"
-setuptools = ">=18.5"
+importlib-metadata = {version = ">=4.3", markers = "python_version < \"3.10\""}
+mergedeep = ">=1.3.4"
+platformdirs = ">=2.2.0"
+pyyaml = ">=5.1"
[[package]]
name = "more-click"
version = "0.1.2"
description = "More click."
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
@@ -2796,23 +2686,32 @@ click = "*"
[package.extras]
tests = ["coverage", "pytest"]
+[[package]]
+name = "more-itertools"
+version = "10.3.0"
+description = "More routines for operating on iterables, beyond itertools"
+optional = false
+python-versions = ">=3.8"
+files = [
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+ {file = "more_itertools-10.3.0-py3-none-any.whl", hash = "sha256:ea6a02e24a9161e51faad17a8782b92a0df82c12c1c8886fec7f0c3fa1a1b320"},
+]
+
[[package]]
name = "multimethod"
-version = "1.11.2"
+version = "1.10"
description = "Multiple argument dispatching."
-category = "main"
optional = false
-python-versions = ">=3.9"
+python-versions = ">=3.8"
files = [
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+ {file = "multimethod-1.10-py3-none-any.whl", hash = "sha256:afd84da9c3d0445c84f827e4d63ad42d17c6d29b122427c6dee9032ac2d2a0d4"},
+ {file = "multimethod-1.10.tar.gz", hash = "sha256:daa45af3fe257f73abb69673fd54ddeaf31df0eb7363ad6e1251b7c9b192d8c5"},
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[[package]]
name = "mypy-extensions"
version = "1.0.0"
description = "Type system extensions for programs checked with the mypy type checker."
-category = "main"
optional = false
python-versions = ">=3.5"
files = [
@@ -2822,18 +2721,17 @@ files = [
[[package]]
name = "myst-parser"
-version = "2.0.0"
+version = "3.0.1"
description = "An extended [CommonMark](https://spec.commonmark.org/) compliant parser,"
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
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+ {file = "myst_parser-3.0.1-py3-none-any.whl", hash = "sha256:6457aaa33a5d474aca678b8ead9b3dc298e89c68e67012e73146ea6fd54babf1"},
+ {file = "myst_parser-3.0.1.tar.gz", hash = "sha256:88f0cb406cb363b077d176b51c476f62d60604d68a8dcdf4832e080441301a87"},
]
[package.dependencies]
-docutils = ">=0.16,<0.21"
+docutils = ">=0.18,<0.22"
jinja2 = "*"
markdown-it-py = ">=3.0,<4.0"
mdit-py-plugins = ">=0.4,<1.0"
@@ -2843,43 +2741,41 @@ sphinx = ">=6,<8"
[package.extras]
code-style = ["pre-commit (>=3.0,<4.0)"]
linkify = ["linkify-it-py (>=2.0,<3.0)"]
-rtd = ["ipython", "pydata-sphinx-theme (==v0.13.0rc4)", "sphinx-autodoc2 (>=0.4.2,<0.5.0)", "sphinx-book-theme (==1.0.0rc2)", "sphinx-copybutton", "sphinx-design2", "sphinx-pyscript", "sphinx-tippy (>=0.3.1)", "sphinx-togglebutton", "sphinxext-opengraph (>=0.8.2,<0.9.0)", "sphinxext-rediraffe (>=0.2.7,<0.3.0)"]
-testing = ["beautifulsoup4", "coverage[toml]", "pytest (>=7,<8)", "pytest-cov", "pytest-param-files (>=0.3.4,<0.4.0)", "pytest-regressions", "sphinx-pytest"]
-testing-docutils = ["pygments", "pytest (>=7,<8)", "pytest-param-files (>=0.3.4,<0.4.0)"]
+rtd = ["ipython", "sphinx (>=7)", "sphinx-autodoc2 (>=0.5.0,<0.6.0)", "sphinx-book-theme (>=1.1,<2.0)", "sphinx-copybutton", "sphinx-design", "sphinx-pyscript", "sphinx-tippy (>=0.4.3)", "sphinx-togglebutton", "sphinxext-opengraph (>=0.9.0,<0.10.0)", "sphinxext-rediraffe (>=0.2.7,<0.3.0)"]
+testing = ["beautifulsoup4", "coverage[toml]", "defusedxml", "pytest (>=8,<9)", "pytest-cov", "pytest-param-files (>=0.6.0,<0.7.0)", "pytest-regressions", "sphinx-pytest"]
+testing-docutils = ["pygments", "pytest (>=8,<9)", "pytest-param-files (>=0.6.0,<0.7.0)"]
[[package]]
name = "nbclient"
-version = "0.9.0"
+version = "0.10.0"
description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor."
-category = "dev"
optional = false
python-versions = ">=3.8.0"
files = [
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+ {file = "nbclient-0.10.0-py3-none-any.whl", hash = "sha256:f13e3529332a1f1f81d82a53210322476a168bb7090a0289c795fe9cc11c9d3f"},
+ {file = "nbclient-0.10.0.tar.gz", hash = "sha256:4b3f1b7dba531e498449c4db4f53da339c91d449dc11e9af3a43b4eb5c5abb09"},
]
[package.dependencies]
jupyter-client = ">=6.1.12"
-jupyter-core = ">=4.12,<5.0.0 || >=5.1.0"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
nbformat = ">=5.1"
traitlets = ">=5.4"
[package.extras]
dev = ["pre-commit"]
docs = ["autodoc-traits", "mock", "moto", "myst-parser", "nbclient[test]", "sphinx (>=1.7)", "sphinx-book-theme", "sphinxcontrib-spelling"]
-test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>=7.0.0)", "pytest (>=7.0)", "pytest-asyncio", "pytest-cov (>=4.0)", "testpath", "xmltodict"]
+test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>=7.0.0)", "pytest (>=7.0,<8)", "pytest-asyncio", "pytest-cov (>=4.0)", "testpath", "xmltodict"]
[[package]]
name = "nbconvert"
-version = "7.16.2"
+version = "7.16.4"
description = "Converting Jupyter Notebooks (.ipynb files) to other formats. Output formats include asciidoc, html, latex, markdown, pdf, py, rst, script. nbconvert can be used both as a Python library (`import nbconvert`) or as a command line tool (invoked as `jupyter nbconvert ...`)."
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
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- {file = "nbconvert-7.16.2.tar.gz", hash = "sha256:8310edd41e1c43947e4ecf16614c61469ebc024898eb808cce0999860fc9fb16"},
+ {file = "nbconvert-7.16.4-py3-none-any.whl", hash = "sha256:05873c620fe520b6322bf8a5ad562692343fe3452abda5765c7a34b7d1aa3eb3"},
+ {file = "nbconvert-7.16.4.tar.gz", hash = "sha256:86ca91ba266b0a448dc96fa6c5b9d98affabde2867b363258703536807f9f7f4"},
]
[package.dependencies]
@@ -2901,30 +2797,29 @@ tinycss2 = "*"
traitlets = ">=5.1"
[package.extras]
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webpdf = ["playwright"]
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@@ -2933,14 +2828,13 @@ test = ["pep440", "pre-commit", "pytest", "testpath"]
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description = "Nice CX Python includes a client and a data model."
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python-versions = "*"
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- {version = ">=1.26.0,<2", markers = "python_version >= \"3.12\""},
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python-dateutil = ">=2.8.2"
pytz = ">=2020.1"
@@ -3364,45 +3234,44 @@ xml = ["lxml (>=4.9.2)"]
[[package]]
name = "pandera"
-version = "0.18.0"
+version = "0.19.3"
description = "A light-weight and flexible data validation and testing tool for statistical data objects."
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optional = false
python-versions = ">=3.7"
files = [
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numpy = ">=1.19.0"
packaging = ">=20.0"
pandas = ">=1.2.0"
pydantic = "*"
-typeguard = ">=3.0.2"
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typing-inspect = ">=0.6.0"
wrapt = "*"
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fastapi = ["fastapi"]
geopandas = ["geopandas", "shapely"]
hypotheses = ["scipy"]
io = ["black", "frictionless (<=4.40.8)", "pyyaml (>=5.1)"]
-modin = ["dask", "modin", "ray"]
-modin-dask = ["dask", "modin"]
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+modin-dask = ["dask[dataframe]", "modin"]
modin-ray = ["modin", "ray"]
mypy = ["pandas-stubs"]
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pyspark = ["pyspark (>=3.2.0)"]
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name = "pandocfilters"
version = "1.5.1"
description = "Utilities for writing pandoc filters in python"
-category = "dev"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
files = [
@@ -3414,7 +3283,6 @@ files = [
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version = "0.0.1"
description = "sqldf for pandas"
-category = "main"
optional = false
python-versions = "*"
files = [
@@ -3429,37 +3297,34 @@ sqlalchemy = "*"
[[package]]
name = "parse"
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description = "parse() is the opposite of format()"
-category = "main"
optional = false
python-versions = "*"
files = [
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name = "parso"
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description = "A Python Parser"
-category = "dev"
optional = false
python-versions = ">=3.6"
files = [
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-testing = ["docopt", "pytest (<6.0.0)"]
+qa = ["flake8 (==5.0.4)", "mypy (==0.971)", "types-setuptools (==67.2.0.1)"]
+testing = ["docopt", "pytest"]
[[package]]
name = "pathspec"
version = "0.12.1"
description = "Utility library for gitignore style pattern matching of file paths."
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optional = false
python-versions = ">=3.8"
files = [
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version = "4.9.0"
description = "Pexpect allows easy control of interactive console applications."
-category = "dev"
optional = false
python-versions = "*"
files = [
@@ -3484,42 +3348,40 @@ ptyprocess = ">=0.5"
[[package]]
name = "pip"
-version = "24.0"
+version = "24.1"
description = "The PyPA recommended tool for installing Python packages."
-category = "dev"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
files = [
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name = "platformdirs"
-version = "4.2.0"
-description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
-category = "main"
+version = "4.2.2"
+description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
optional = false
python-versions = ">=3.8"
files = [
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test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4.3)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)"]
+type = ["mypy (>=1.8)"]
[[package]]
name = "pluggy"
-version = "1.4.0"
+version = "1.5.0"
description = "plugin and hook calling mechanisms for python"
-category = "main"
optional = false
python-versions = ">=3.8"
files = [
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name = "ply"
version = "3.11"
description = "Python Lex & Yacc"
-category = "main"
optional = false
python-versions = "*"
files = [
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version = "0.1.12"
description = "A python API for working with ID prefixes"
-category = "main"
optional = false
python-versions = ">=3.7,<4.0"
files = [
@@ -3558,14 +3418,13 @@ requests = ">=2.28.1,<3.0.0"
[[package]]
name = "prefixmaps"
-version = "0.2.2"
+version = "0.2.4"
description = "A python library for retrieving semantic prefix maps"
-category = "main"
optional = false
-python-versions = ">=3.8,<4.0"
+python-versions = "<4.0,>=3.8"
files = [
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@@ -3576,7 +3435,6 @@ pyyaml = ">=5.3.1"
name = "prometheus-client"
version = "0.20.0"
description = "Python client for the Prometheus monitoring system."
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
@@ -3589,14 +3447,13 @@ twisted = ["twisted"]
[[package]]
name = "prompt-toolkit"
-version = "3.0.43"
+version = "3.0.47"
description = "Library for building powerful interactive command lines in Python"
-category = "dev"
optional = false
python-versions = ">=3.7.0"
files = [
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[package.dependencies]
@@ -3604,14 +3461,13 @@ wcwidth = "*"
[[package]]
name = "pronto"
-version = "2.5.6"
+version = "2.5.7"
description = "Python frontend to ontologies."
-category = "main"
optional = false
python-versions = ">=3.7"
files = [
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networkx = ">=2.3,<4.0"
python-dateutil = ">=2.8,<3.0"
+[[package]]
+name = "proto-plus"
+version = "1.24.0"
+description = "Beautiful, Pythonic protocol buffers."
+optional = false
+python-versions = ">=3.7"
+files = [
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+
+[package.extras]
+testing = ["google-api-core (>=1.31.5)"]
+
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name = "protobuf"
-version = "4.25.3"
+version = "5.27.1"
description = ""
-category = "main"
optional = false
python-versions = ">=3.8"
files = [
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packaging = "*"
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+ {file = "watchdog-4.0.1-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:d10a681c9a1d5a77e75c48a3b8e1a9f2ae2928eda463e8d33660437705659682"},
+ {file = "watchdog-4.0.1-pp310-pypy310_pp73-macosx_10_9_x86_64.whl", hash = "sha256:0144c0ea9997b92615af1d94afc0c217e07ce2c14912c7b1a5731776329fcfc7"},
+ {file = "watchdog-4.0.1-pp310-pypy310_pp73-macosx_11_0_arm64.whl", hash = "sha256:998d2be6976a0ee3a81fb8e2777900c28641fb5bfbd0c84717d89bca0addcdc5"},
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+ {file = "watchdog-4.0.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl", hash = "sha256:bca36be5707e81b9e6ce3208d92d95540d4ca244c006b61511753583c81c70dd"},
+ {file = "watchdog-4.0.1-pp39-pypy39_pp73-macosx_11_0_arm64.whl", hash = "sha256:ab998f567ebdf6b1da7dc1e5accfaa7c6992244629c0fdaef062f43249bd8dee"},
+ {file = "watchdog-4.0.1-py3-none-manylinux2014_aarch64.whl", hash = "sha256:dddba7ca1c807045323b6af4ff80f5ddc4d654c8bce8317dde1bd96b128ed253"},
+ {file = "watchdog-4.0.1-py3-none-manylinux2014_armv7l.whl", hash = "sha256:4513ec234c68b14d4161440e07f995f231be21a09329051e67a2118a7a612d2d"},
+ {file = "watchdog-4.0.1-py3-none-manylinux2014_i686.whl", hash = "sha256:4107ac5ab936a63952dea2a46a734a23230aa2f6f9db1291bf171dac3ebd53c6"},
+ {file = "watchdog-4.0.1-py3-none-manylinux2014_ppc64.whl", hash = "sha256:6e8c70d2cd745daec2a08734d9f63092b793ad97612470a0ee4cbb8f5f705c57"},
+ {file = "watchdog-4.0.1-py3-none-manylinux2014_ppc64le.whl", hash = "sha256:f27279d060e2ab24c0aa98363ff906d2386aa6c4dc2f1a374655d4e02a6c5e5e"},
+ {file = "watchdog-4.0.1-py3-none-manylinux2014_s390x.whl", hash = "sha256:f8affdf3c0f0466e69f5b3917cdd042f89c8c63aebdb9f7c078996f607cdb0f5"},
+ {file = "watchdog-4.0.1-py3-none-manylinux2014_x86_64.whl", hash = "sha256:ac7041b385f04c047fcc2951dc001671dee1b7e0615cde772e84b01fbf68ee84"},
+ {file = "watchdog-4.0.1-py3-none-win32.whl", hash = "sha256:206afc3d964f9a233e6ad34618ec60b9837d0582b500b63687e34011e15bb429"},
+ {file = "watchdog-4.0.1-py3-none-win_amd64.whl", hash = "sha256:7577b3c43e5909623149f76b099ac49a1a01ca4e167d1785c76eb52fa585745a"},
+ {file = "watchdog-4.0.1-py3-none-win_ia64.whl", hash = "sha256:d7b9f5f3299e8dd230880b6c55504a1f69cf1e4316275d1b215ebdd8187ec88d"},
+ {file = "watchdog-4.0.1.tar.gz", hash = "sha256:eebaacf674fa25511e8867028d281e602ee6500045b57f43b08778082f7f8b44"},
]
[package.extras]
@@ -6063,7 +5655,6 @@ watchmedo = ["PyYAML (>=3.10)"]
name = "wcwidth"
version = "0.2.13"
description = "Measures the displayed width of unicode strings in a terminal"
-category = "dev"
optional = false
python-versions = "*"
files = [
@@ -6073,25 +5664,23 @@ files = [
[[package]]
name = "webcolors"
-version = "1.13"
+version = "24.6.0"
description = "A library for working with the color formats defined by HTML and CSS."
-category = "main"
optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
files = [
- {file = "webcolors-1.13-py3-none-any.whl", hash = "sha256:29bc7e8752c0a1bd4a1f03c14d6e6a72e93d82193738fa860cbff59d0fcc11bf"},
- {file = "webcolors-1.13.tar.gz", hash = "sha256:c225b674c83fa923be93d235330ce0300373d02885cef23238813b0d5668304a"},
+ {file = "webcolors-24.6.0-py3-none-any.whl", hash = "sha256:8cf5bc7e28defd1d48b9e83d5fc30741328305a8195c29a8e668fa45586568a1"},
+ {file = "webcolors-24.6.0.tar.gz", hash = "sha256:1d160d1de46b3e81e58d0a280d0c78b467dc80f47294b91b1ad8029d2cedb55b"},
]
[package.extras]
docs = ["furo", "sphinx", "sphinx-copybutton", "sphinx-inline-tabs", "sphinx-notfound-page", "sphinxext-opengraph"]
-tests = ["pytest", "pytest-cov"]
+tests = ["coverage[toml]"]
[[package]]
name = "webencodings"
version = "0.5.1"
description = "Character encoding aliases for legacy web content"
-category = "dev"
optional = false
python-versions = "*"
files = [
@@ -6101,38 +5690,35 @@ files = [
[[package]]
name = "websocket-client"
-version = "1.7.0"
+version = "1.8.0"
description = "WebSocket client for Python with low level API options"
-category = "dev"
optional = false
python-versions = ">=3.8"
files = [
- {file = "websocket-client-1.7.0.tar.gz", hash = "sha256:10e511ea3a8c744631d3bd77e61eb17ed09304c413ad42cf6ddfa4c7787e8fe6"},
- {file = "websocket_client-1.7.0-py3-none-any.whl", hash = "sha256:f4c3d22fec12a2461427a29957ff07d35098ee2d976d3ba244e688b8b4057588"},
+ {file = "websocket_client-1.8.0-py3-none-any.whl", hash = "sha256:17b44cc997f5c498e809b22cdf2d9c7a9e71c02c8cc2b6c56e7c2d1239bfa526"},
+ {file = "websocket_client-1.8.0.tar.gz", hash = "sha256:3239df9f44da632f96012472805d40a23281a991027ce11d2f45a6f24ac4c3da"},
]
[package.extras]
-docs = ["Sphinx (>=6.0)", "sphinx-rtd-theme (>=1.1.0)"]
+docs = ["Sphinx (>=6.0)", "myst-parser (>=2.0.0)", "sphinx-rtd-theme (>=1.1.0)"]
optional = ["python-socks", "wsaccel"]
test = ["websockets"]
[[package]]
name = "widgetsnbextension"
-version = "4.0.10"
+version = "4.0.11"
description = "Jupyter interactive widgets for Jupyter Notebook"
-category = "dev"
optional = false
python-versions = ">=3.7"
files = [
- {file = "widgetsnbextension-4.0.10-py3-none-any.whl", hash = "sha256:d37c3724ec32d8c48400a435ecfa7d3e259995201fbefa37163124a9fcb393cc"},
- {file = "widgetsnbextension-4.0.10.tar.gz", hash = "sha256:64196c5ff3b9a9183a8e699a4227fb0b7002f252c814098e66c4d1cd0644688f"},
+ {file = "widgetsnbextension-4.0.11-py3-none-any.whl", hash = "sha256:55d4d6949d100e0d08b94948a42efc3ed6dfdc0e9468b2c4b128c9a2ce3a7a36"},
+ {file = "widgetsnbextension-4.0.11.tar.gz", hash = "sha256:8b22a8f1910bfd188e596fe7fc05dcbd87e810c8a4ba010bdb3da86637398474"},
]
[[package]]
name = "wrapt"
version = "1.16.0"
description = "Module for decorators, wrappers and monkey patching."
-category = "main"
optional = false
python-versions = ">=3.6"
files = [
@@ -6212,7 +5798,6 @@ files = [
name = "xmltodict"
version = "0.13.0"
description = "Makes working with XML feel like you are working with JSON"
-category = "main"
optional = false
python-versions = ">=3.4"
files = [
@@ -6222,19 +5807,18 @@ files = [
[[package]]
name = "zipp"
-version = "3.17.0"
+version = "3.19.2"
description = "Backport of pathlib-compatible object wrapper for zip files"
-category = "main"
optional = false
python-versions = ">=3.8"
files = [
- {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
- {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"},
+ {file = "zipp-3.19.2-py3-none-any.whl", hash = "sha256:f091755f667055f2d02b32c53771a7a6c8b47e1fdbc4b72a8b9072b3eef8015c"},
+ {file = "zipp-3.19.2.tar.gz", hash = "sha256:bf1dcf6450f873a13e952a29504887c89e6de7506209e5b1bcc3460135d4de19"},
]
[package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
[extras]
docs = []
@@ -6243,4 +5827,4 @@ mariadb = []
[metadata]
lock-version = "2.0"
python-versions = "^3.9"
-content-hash = "6e3ed517c6397fb41ecd6e3e1b3183402f5900c297ae9d90baa2440ca6940702"
+content-hash = "20aa1f7c97b5b8434776a241a36b2ff1612efc6f84b09ee5b521a66b6f42cd0f"
diff --git a/pyproject.toml b/pyproject.toml
index b03f8f9..18c8b6f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -32,6 +32,7 @@ xmltodict = "^0.13.0"
click-default-group = "^1.2.4"
linkml-runtime = "^1.7.2"
duckdb = "^0.10.1"
+numpy = "^1.21.4,<2.0.0"
[tool.poetry.dev-dependencies]
diff --git a/schema_automator/cli.py b/schema_automator/cli.py
index 18c33ef..aac7728 100644
--- a/schema_automator/cli.py
+++ b/schema_automator/cli.py
@@ -24,6 +24,7 @@
from schema_automator.generalizers.pandas_generalizer import PandasDataGeneralizer
from schema_automator.importers.cadsr_import_engine import CADSRImportEngine
from schema_automator.importers.dosdp_import_engine import DOSDPImportEngine
+from schema_automator.importers.eml_import_engine import EMLImportEngine
from schema_automator.generalizers.json_instance_generalizer import JsonDataGeneralizer
from schema_automator.importers.jsonschema_import_engine import JsonSchemaImportEngine
from schema_automator.importers.kwalify_import_engine import KwalifyImportEngine
@@ -491,6 +492,23 @@ def import_rdfs(rdfsfile, output, metamodel_mappings, **args):
schema = sie.convert(rdfsfile, **args)
write_schema(schema, output)
+@main.command()
+@click.argument('input')
+@output_option
+@schema_name_option
+@schema_id_option
+def import_eml(input, output, schema_name, schema_id, **kwargs):
+ """
+ Import Ecological Metadata Language (EML) format data and metadata to LinkML schema
+
+ Example:
+
+ schemauto import-eml dataset.eml -o dataset.yaml
+ """
+ ie = EMLImportEngine(**kwargs)
+ schema = ie.convert(input, name=schema_name, id=schema_id)
+ write_schema(schema, output)
+
@main.command()
@click.argument('rdffile')
@output_option
diff --git a/schema_automator/importers/eml_import_engine.py b/schema_automator/importers/eml_import_engine.py
new file mode 100644
index 0000000..f424c30
--- /dev/null
+++ b/schema_automator/importers/eml_import_engine.py
@@ -0,0 +1,55 @@
+"""Import engine for importing EML files as LinkML schema."""
+
+import logging
+
+from dataclasses import dataclass
+
+from linkml.utils.schema_builder import SchemaBuilder
+from linkml_runtime.linkml_model.meta import (
+ SchemaDefinition,
+ SlotDefinition,
+ EnumDefinition,
+ PermissibleValue,
+)
+from linkml_runtime.loaders import json_loader
+from linkml_runtime.utils.formatutils import camelcase
+
+from schema_automator.importers.import_engine import ImportEngine
+import schema_automator.metamodels.eml as eml
+
+
+TYPE_MAPPING = {
+ "string": "string",
+ "datetime": "datetime",
+ "boolean": "boolean",
+ "integer": "integer",
+ "number": "decimal",
+}
+
+
+@dataclass
+class EMLImportEngine(ImportEngine):
+ """
+ An ImportEngine that imports Environmental Metadata Language (EML) files into LinkML schemas.
+
+ See:
+
+ `EML documentation `_
+ `EML xml schema `_
+
+ """
+
+ def convert(
+ self, file: str, id: str = None, name: str = None, **kwargs
+ ) -> SchemaDefinition:
+ """
+ Converts EML data and metadata into a Schema
+
+ :param files:
+ :param kwargs:
+ :return:
+ """
+ package: eml.Document = json_loader.load(file, target_class=eml.Document)
+ sb = SchemaBuilder()
+ schema = sb.schema
+ return sb.schema