nextflow_schema.json

{
    "$schema": "http://json-schema.org/draft-07/schema",
    "$id": "https://raw.githubusercontent.com/./master/nextflow_schema.json",
    "title": ". pipeline parameters",
    "description": "",
    "type": "object",
    "definitions": {
        "input_output_options": {
            "title": "Input/output options",
            "type": "object",
            "fa_icon": "fas fa-terminal",
            "description": "Define where the pipeline should find input samplesheet.",
            "required": ["indir", "outdir"],
            "properties": {
                "indir": {
                    "type": "string",
                    "format": "directory-path",
                    "description": "The input directory where fastq files are located. You have to use absolute paths to storage on Cloud infrastructure."
                },
                "outdir": {
                    "type": "string",
                    "format": "directory-path",
                    "description": "The output directory where the results will be saved. You have to use absolute paths to storage on Cloud infrastructure.",
                    "fa_icon": "fas fa-folder-open"
                },
                "genome": {
                    "type": "string"
                },
                "fasta": {
                    "type": "string"
                },
                "bwaindex": {
                    "type": "string"
                }
            }
        }
    },
    "allOf": [
        {
            "$ref": "#/definitions/input_output_options"
        }
    ]
}