.gitignore

*.log
*.nfs*
*.Rout
*.tsv
*.aux
*.nav
*.out
*.toc
*.snm
*.gz
*.csv
*.RData
*.Rdata
*.tsv
*.DS_Store
*.jpeg
*.jpg
*.png
data/
@eaDir/
.fuse_hidden00003c6c00000002
*.fuse_hidden*
results/compare_adjustments/
results/ewaff*/
results/focus_merged_ccs/
results/ggm/
results/images/
results/pathways/
*_LM*

# History files
.Rhistory
.Rapp.history

# Session Data files
.RData

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron