Dockerfile

# start from base
FROM ubuntu:16.04
MAINTAINER Lawrence Campbell <mightylorenzo@gmail.com>

# install system-wide deps for Puffin
RUN apt-get -yqq update && \
             apt -y install gfortran \
             libhdf5-mpi-dev \
             libhdf5-openmpi-dev \
             libfftw3-dev \
             libfftw3-mpi-dev \
             cmake \
             libopenmpi-dev \
             g++ \
             doxygen \
             graphviz \
             texlive-latex-base \
             ghostscript \
             git

# NOTE - 'WORKDIR' is essentially just 'cd'

# Create user for running Puffin


RUN useradd --create-home puffin_user
RUN mkdir /home/puffin_user/tmp/
RUN mkdir /home/puffin_user/tmp/puffin-src
RUN mkdir /home/puffin_user/tmp/puffin-build
RUN mkdir /home/puffin_user/tmp/puffin-test
RUN mkdir /home/puffin_user/tmp/pFUnit
RUN mkdir /home/puffin_user/built/
RUN mkdir /home/puffin_user/built/puffin
RUN mkdir /home/puffin_user/built/pfunit-parallel
RUN mkdir /home/puffin_user/project # for running in Puffin
COPY . /home/puffin_user/tmp/puffin-src
RUN chown -R puffin_user /home/puffin_user
# Grant sudo access without password
RUN echo 'puffin_user ALL=(ALL) NOPASSWD: ALL' >> /etc/sudoers


# Switch to Puffin user to compile Puffin
USER puffin_user

# Build pFUnit
WORKDIR /home/puffin_user/tmp
RUN git clone https://github.com/Goddard-Fortran-Ecosystem/pFUnit.git pFUnit
WORKDIR /home/puffin_user/tmp/pFUnit
ENV F90_VENDOR=GNU
ENV F90=gfortran
ENV MPIF90=mpif90
RUN make tests MPI=YES
RUN make install INSTALL_DIR=/home/puffin_user/built/pfunit-parallel




#WORKDIR /home/puffin_user/tmp/puffin-src

# Can also use ADD, which accepts URL's, but COPY is currently recommended over ADD

# COPY . .
# COPY inputs/simple/1D/OptCommV165pp65-70/fig1 /tmp/puffin-test

WORKDIR /home/puffin_user/tmp/puffin-build

ENV PATH="/usr/include/hdf5/openmpi:${PATH}"
ENV PFUNIT_INSTALL=/home/puffin_user/built/pfunit-parallel
# Run CMake

RUN cmake -DCMAKE_INSTALL_PREFIX:PATH=/home/puffin_user/built/puffin \
          -DENABLE_PARALLEL:BOOL=TRUE \
          -DENABLE_TESTING:BOOL=TRUE \
          -DHdf5_MODULE_DIRS='/usr/include/hdf5/openmpi' \
          -DHdf5_LIBRARY_DIRS='/usr/lib/x86_64-linux-gnu/hdf5/openmpi;/usr/lib/x86_64-linux-gnu/' \
          -DHdf5_INCLUDE_DIRS='/usr/include/hdf5/openmpi' \
          -DHdf5_LIBRARY_NAMES='hdf5_openmpi_fortran;hdf5_openmpi' \
          -DHdf5_LIBRARIES='/usr/lib/x86_64-linux-gnu/libhdf5_openmpi_fortran.so;/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.so' \
          -DHdf5_STLIBS='/usr/lib/x86_64-linux-gnu/libhdf5_openmpi_fortran.a;/usr/lib/x86_64-linux-gnu/libhdf5_openmpi.a' \
          /home/puffin_user/tmp/puffin-src

RUN make && make doc && make install

ENV OMP_NUM_THREADS=1
RUN mpirun -np 4 /home/puffin_user/tmp/puffin-build/test/testexe
WORKDIR /home/puffin_user/project

CMD /bin/bash




# Run Puffin
#ENV OMP_NUM_THREADS=1
#WORKDIR /tmp/puffin-test

# CMD mpirun -np 2 /opt/puffin/bin/puffin f1main.in