SLURM scripts and description for running it on the cluster

README.md

@@ -19,5 +19,17 @@ cargo build --release
 should suffice
 
 ### [SCC cluster](https://gwdg.de/hpc/systems/scc/)
+- Use `rustup`, not modules
+- Get a up to date rust compiler via `rustup update`
+
+- `cc`, which is mapped to the default `gcc`, is too old.
+  - Load a newer gcc via `module load gcc/11.4.0`
+  - Tell rust to use that one via `CC=$(which gcc) cargo build --release`
+
 
 ### [Emmy HLRN cluster](https://gwdg.de/hpc/systems/emmy/)
+- Use `rustup`, not modules
+- Get a up to date rust compiler via `rustup update`
+
+- get the newest `gcc` as module as well
+  - Tell rust to use that one via `CC=$(which gcc) cargo build --release`

SLURM/Emmy.sh

@@ -0,0 +1,14 @@
+#!/bin/bash
+#SBATCH -t 1:00:00
+#SBATCH -p standard96
+#SBATCH --output=emmy-%j.out
+
+CLUSTER="emmy"
+
+SCRIPT_DIR="/scratch-emmy/usr/$(whoami)/blackheap"
+cd $SCRIPT_DIR
+
+PATH_TO_SAVE_OUTPUT="${SCRIPT_DIR}/output_${CLUSTER}"
+PATH_TO_BENCHMARK_FILE="${SCRIPT_DIR}/benchmark_${CLUSTER}.dat"
+
+./target/release/blackheap ${PATH_TO_SAVE_OUTPUT} -f ${PATH_TO_BENCHMARK_FILE}

SLURM/SCC.sh

@@ -0,0 +1,16 @@
+#!/bin/bash
+#SBATCH -t 1:00:00
+#SBATCH -p medium
+#SBATCH --output=scc-%j.out
+#SBATCH --mem=5G
+
+CLUSTER="scc"
+
+SCRIPT_DIR="/scratch/users/$(whoami)/blackheap"
+cd $SCRIPT_DIR
+
+PATH_TO_SAVE_OUTPUT="${SCRIPT_DIR}/output_${CLUSTER}"
+PATH_TO_BENCHMARK_FILE="${SCRIPT_DIR}/benchmark_${CLUSTER}.dat"
+
+./target/release/blackheap ${PATH_TO_SAVE_OUTPUT} -f ${PATH_TO_BENCHMARK_FILE}
+