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Use a kustomize patchStrategicMerge to apply the following patches to patch the ArgoCD install.yaml.

sopsSecretsGenerator.yaml

apiVersion: apps/v1
kind: Deployment
metadata:
  name: argocd-repo-server
spec:
  template:
    spec:
      volumes:
        - name: custom-tools
          emptyDir: {}
      initContainers:
        - name: install-goaboutsops
          image: alpine:3.11.3
          command: ["/bin/sh", "-c"]
          args:
            - echo "Installing goabout kustomize sops...";
              set -e;
              set -x;
              wget -O /custom-tools/SopsSecretGenerator https://github.com/goabout/kustomize-sopssecretgenerator/releases/download/v${VERSION}/SopsSecretGenerator_${VERSION}_${PLATFORM}_${ARCH};
              chmod -v +x /custom-tools/SopsSecretGenerator;
              set +x;
              echo "Done.";
          volumeMounts:
            - mountPath: /custom-tools
              name: custom-tools
          env:
            - name: VERSION
              value: 1.3.2
            - name: PLATFORM
              value: linux
            - name: ARCH
              value: amd64
      containers:
        - name: argocd-repo-server
          volumeMounts:
            - mountPath: /.config/kustomize/plugin/goabout.com/v1beta1/sopssecretgenerator/SopsSecretGenerator
              name: custom-tools
              subPath: SopsSecretGenerator
          env:
            - name: XDG_CONFIG_HOME
              value: /.config

enablePlugins.yaml

apiVersion: v1
kind: ConfigMap
metadata:
  name: argocd-cm
data:
  kustomize.buildOptions: --enable_alpha_plugins

Key Managment Server Credendials Examples

Don't forget to include approprately named secrets with your GCP Service Account, Azure Service Principal (not documented here), or AWS Id and Key

gcpServiceAccount.yaml

apiVersion: apps/v1
kind: Deployment
metadata:
name: argocd-repo-server
spec:
template:
  spec:
  volumes:
    - name: gcpServiceAccount
      secret:
        secretName: gcpServiceAccount.json
  containers:
    - name: argocd-repo-server
    volumeMounts:
      - mountPath: /.secrets/gcp/ServiceAccount.json
        name: gcpServiceAccount
        subPath: gcpServiceAccount.json
    env:
      - name: GOOGLE_APPLICATION_CREDENTIALS
        value: /.secrets/gcp/ServiceAccount.json

awsServiceAccount.yaml

apiVersion: apps/v1
kind: Deployment
metadata:
name: argocd-repo-server
spec:
template:
  spec:
  containers:
    - name: argocd-repo-server
      env:
      - name: AWS_ACCESS_KEY_ID
        valueFrom:
          secretKeyRef:
            name: argocd-aws-credentials
            key: accesskey
      - name: AWS_SECRET_ACCESS_KEY
        valueFrom:
          secretKeyRef:
            name: argocd-aws-credentials
            key: secretkey