From d4900825a804d897cb292882fd7c61bcf1c26e11 Mon Sep 17 00:00:00 2001 From: btmonier Date: Fri, 25 Oct 2024 14:07:12 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20maize-ge?= =?UTF-8?q?netics/rPHG2@435f6c2797c1e710ace80565c842baedbf7e6806=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 2 +- LICENSE-text.html | 2 +- articles/index.html | 2 +- articles/metrics.html | 2 +- articles/rPHG2.html | 86 ++++++++++-------- .../figure-html/unnamed-chunk-24-1.png | Bin 31712 -> 42729 bytes .../figure-html/unnamed-chunk-25-1.png | Bin 35655 -> 31712 bytes .../figure-html/unnamed-chunk-26-1.png | Bin 37249 -> 35655 bytes .../figure-html/unnamed-chunk-27-1.png | Bin 26528 -> 37249 bytes .../figure-html/unnamed-chunk-28-1.png | Bin 0 -> 26528 bytes authors.html | 6 +- deps/Barlow-0.4.9/font.css | 4 +- deps/Oswald-0.4.9/font.css | 6 +- deps/Roboto_Mono-0.4.9/font.css | 6 +- index.html | 7 +- news/index.html | 12 ++- pkgdown.yml | 2 +- reference/-.html | 8 ++ reference/HaplotypeGraph-class.html | 2 +- reference/HaplotypeGraph-validity.html | 2 +- reference/JvmStats-class.html | 2 +- reference/PHGCon-class.html | 2 +- reference/PHGCon-validity.html | 2 +- reference/PHGDataSet-class.html | 2 +- reference/PHGDataSet.html | 2 +- reference/PHGLocalCon-class.html | 2 +- reference/PHGLocalCon-validity.html | 2 +- reference/PHGLocalCon.html | 7 +- reference/PHGMetrics-class.html | 2 +- reference/PHGMetrics.html | 2 +- reference/PHGServerCon-class.html | 2 +- reference/PHGServerCon-validity.html | 2 +- reference/PHGServerCon.html | 2 +- reference/TODO.html | 8 ++ reference/TileDB.html | 8 ++ reference/brapiURL.html | 2 +- reference/brapiVersion.html | 2 +- reference/buildHaplotypeGraph.html | 2 +- reference/calls.html | 8 ++ reference/cash-PHGMetrics-method.html | 2 +- reference/direct.html | 8 ++ reference/dot-DollarNames.PHGMetrics.html | 2 +- reference/filterRefRanges.html | 2 +- reference/filterSamples.html | 2 +- reference/grapes-T-grapes.html | 2 +- reference/hVcfFiles.html | 2 +- reference/host.html | 2 +- reference/httProtocol.html | 2 +- reference/implement.html | 8 ++ reference/index.html | 2 +- reference/initPhg.html | 2 +- reference/javaMemoryAddress.html | 2 +- reference/javaRefObj.html | 2 +- reference/javaVersion.html | 2 +- reference/jvmMemStats.html | 2 +- reference/jvmStats.html | 2 +- reference/metricsIds.html | 2 +- reference/metricsMetaData.html | 2 +- reference/metricsTable.html | 2 +- reference/numberOfChromosomes.html | 2 +- reference/numberOfHaplotypes.html | 2 +- reference/numberOfJars.html | 2 +- reference/numberOfRefRanges.html | 2 +- reference/numberOfSamples.html | 2 +- reference/phgType.html | 2 +- reference/phgVersion.html | 2 +- reference/plotDot.html | 2 +- reference/plotGvcf.html | 2 +- reference/plotHaploCounts.html | 2 +- reference/plotHaploDist.html | 2 +- reference/port.html | 2 +- reference/readHapIdMetaData.html | 2 +- reference/readHapIdPosMetaData.html | 2 +- reference/readHapIds.html | 2 +- reference/readPhgDataSet.html | 2 +- reference/readRefRanges.html | 2 +- reference/readSamples.html | 2 +- reference/seqnames-PHGMetrics-method.html | 2 +- reference/seqnames-set-PHGMetrics-method.html | 2 +- reference/serverInfo.html | 2 +- reference/to.html | 8 ++ reference/with.html | 8 ++ search.json | 2 +- 83 files changed, 203 insertions(+), 119 deletions(-) create mode 100644 articles/rPHG2_files/figure-html/unnamed-chunk-28-1.png create mode 100644 reference/-.html create mode 100644 reference/TODO.html create mode 100644 reference/TileDB.html create mode 100644 reference/calls.html create mode 100644 reference/direct.html create mode 100644 reference/implement.html create mode 100644 reference/to.html create mode 100644 reference/with.html diff --git a/404.html b/404.html index 8be2a04..ccf7017 100644 --- a/404.html +++ b/404.html @@ -24,7 +24,7 @@ rPHG2 - 0.7 + 0.7.1