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The scaffold command was submitted and the assembled result was not available #180

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LZY19940813 opened this issue Jun 18, 2024 · 1 comment

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@LZY19940813
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I assembled scffolds using the contigs file(about 2Gb)that was reassembled from generation 2 by SOAPdenovo2 tool. My scripting have been running for 2 days and I still only have a result file for "ragtag.scaffold.asm.paf". I don't know what the problem is. So, could you tell me if who have any good suggestions. Thank you!

@LZY19940813
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Traceback (most recent call last):
File "/gss1/home/wangzx02/.conda/envs/ragtag/bin/ragtag.py", line 133, in
main()
File "/gss1/home/wangzx02/.conda/envs/ragtag/bin/ragtag.py", line 89, in main
subprocess.call(subcmd)
File "/gss1/home/wangzx02/.conda/envs/ragtag/lib/python3.6/subprocess.py", line 289, in call
return p.wait(timeout=timeout)
File "/gss1/home/wangzx02/.conda/envs/ragtag/lib/python3.6/subprocess.py", line 1477, in wait
(pid, sts) = self._try_wait(0)
File "/gss1/home/wangzx02/.conda/envs/ragtag/lib/python3.6/subprocess.py", line 1424, in _try_wait
(pid, sts) = os.waitpid(self.pid, wait_flags)

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