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How to change the mapQ and τ？ #25

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wangzhennan14 opened this issue Aug 20, 2021 · 1 comment
Open

How to change the mapQ and τ？ #25

wangzhennan14 opened this issue Aug 20, 2021 · 1 comment

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@wangzhennan14
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Dear @cjain7,
I would like to seek you help please! I want to change the mapQ and τ value to improve alignment accuracy, but I do not find how to change the parameters? Could you tell me how to modify the parameters，please? Thank you very much!
Best wishes,
ZhennanWang
@cjain7
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cjain7 commented Aug 20, 2021

See min_mapq parameter in options.c. Currently this is not exposed via command line.

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@cjain7 @wangzhennan14