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Option to preserve MM/ML tags #48

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aliceedoe opened this issue Sep 5, 2024 · 1 comment
Open

Option to preserve MM/ML tags #48

aliceedoe opened this issue Sep 5, 2024 · 1 comment

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@aliceedoe
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I thank you for the possibility to better map long reads to the repetitive regions, but I would be even more grateful if preserving the HiFi methylation tags was also possible... Not sure how the clipping affects this issue...
@arangrhie
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You can use the -y option. It will put them in the tags as they are in the input fastq file.

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@arangrhie @aliceedoe