FastP Version 0.24, doi: 10.1093/bioinformatics/bty560, PubMed github
MultiQC Version 1.19, doi: 10.1093/bioinformatics/btw354, PubMed github
Samtools Version 1.19, doi: 10.1093/bioinformatics/btp352, PubMed github
Vsearch Version 2.27.0, doi: 10.7717/peerj.2584, PubMed github
Ptrimmer Version 1.3.3, doi: 10.1186/s12859-019-2854-x, PubMed github
Bwa-mem2 Version 2.2.1, doi: 10.1109/IPDPS.2019.00041, IEEE Explore github
Freebayes Version 1.3.6, ArXiv github
Blast Version 2.15, doi: 10.1016/S0022-2836(05)80360-2, PubMed [NCBI] https://blast.ncbi.nlm.nih.gov/doc/blast-help/downloadblastdata.html
Bedtools Version 2.31.1, doi: 10.1093/bioinformatics/btq033, PubMed github