This Github repository contains the code, datafiles, and output of the Bachelor Biomedical Sciences internships (2021) by Aria Jadhav and Stefan Raats.
Both work on Jupyter notebooks to work with molecular Adverse Outcome Pathways of COVID-19 and in vitro gene expression data. Using Py4cytoscape, the Jupyter notebooks forward commands to Cytoscape which is used for network creation, extending, and data visualisations.
- Stefan's final files are here: Raats
- Aria's final files are here: Aria-Notebooks