aspera_connect_lsf

#!/bin/bash

#BSUB -q priority
#BSUB -W 36:00
#BSUB -n 1
#BSUB -J broad_download
#BSUB -o %J.out
#BSUB -e %J.err

#Add aspera to PATH
export PATH=$PATH:~/.aspera/connect/bin

#Create variable for FILEPASS
export ASPERA_SCP_FILEPASS=password

# Change directories to ascp_test, where the shares_download.sh script is located
cd ~/ascp_test/

# Download files from Broad to Orchestra bcbio Vafai folder
./shares_download.sh .  https://shares.broadinstitute.org SN#######:encrpDtesTsitE SN######