ERROR: Can't read one of "flexbounds", "relpos"

[jsan4christ]

Greetings LinearHam Team,

When I run: scons --run-linearham --template-path=templates/revbayes_template.rev --parameter-dir=/linearham/work/igh --outdir=/linearham/work/igh/output --partis-yaml-file=/linearham/work/igh/output/partis_run.yaml --mcmc-iter=10000 --mcmc-thin=1 --tune-iter=0

I get the following error:

writing 5 sequences to work/igh/output/cluster-0/cluster_seqs.fasta
scripts/generate_revbayes_rev_file.py templates/revbayes_template.rev --fasta-path work/igh/output/cluster-0/cluster_seqs.fasta --mcmc-iter 10000 --mcmc-thin 1 --tune-iter 0 --tune-thin 100 --num-rates 4 --seed 0 --output-path work/igh/output/cluster-0/mcmciter10000_mcmcthin1_tuneiter0_tunethin100_numrates4_rngseed0/revbayes_run.rev
lib/revbayes/projects/cmake/rb work/igh/output/cluster-0/mcmciter10000_mcmcthin1_tuneiter0_tunethin100_numrates4_rngseed0/revbayes_run.rev > work/igh/output/cluster-0/mcmciter10000_mcmcthin1_tuneiter0_tunethin100_numrates4_rngseed0/revbayes_run.stdout.log
_build/linearham/linearham --pipeline --yaml-path work/igh/output/cluster-0/cluster.yaml --cluster-ind 0 --hmm-param-dir /linearham/work/igh/hmm/hmms --seed 0 --num-rates 4 --input-path work/igh/output/cluster-0/mcmciter10000_mcmcthin1_tuneiter0_tunethin100_numrates4_rngseed0/revbayes_run.trees --output-path work/igh/output/cluster-0/mcmciter10000_mcmcthin1_tuneiter0_tunethin100_numrates4_rngseed0/lh_revbayes_run.trees
ERROR: Can't read one of "flexbounds", "relpos" from work/igh/output/cluster-0/cluster.yaml . Check that "linearham-info" was written to the yaml file and is not null.
scons: *** [work/igh/output/cluster-0/mcmciter10000_mcmcthin1_tuneiter0_tunethin100_numrates4_rngseed0/lh_revbayes_run.trees] Error 1
scons: building terminated because of errors.

I suspect that its due to a small number of sequences that are part of the clone (5), but not sure. Any thoughts on how to resolve?