Skip to content

Commit

Permalink
bump version 1.2.0 -> 1.3.0
Browse files Browse the repository at this point in the history
  • Loading branch information
jgallowa07 committed Nov 6, 2024
1 parent bd75e60 commit d212fc9
Show file tree
Hide file tree
Showing 3 changed files with 11 additions and 11 deletions.
16 changes: 8 additions & 8 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ FROM quay.io/hdc-workflows/ubuntu:20.04
ADD http://date.jsontest.com /etc/builddate

LABEL maintainer "Jared Galloway <[email protected]>" \
version "1.2.0" \
version "1.3.0" \
description "Common PhIP-Seq Workflows"

# install needed tools
Expand All @@ -30,17 +30,17 @@ RUN python3 -m venv $VIRTUAL_ENV
ENV PATH="$VIRTUAL_ENV/bin:$PATH"

# install phippery
RUN pip install git+https://github.com/matsengrp/phippery@1.2.0
RUN pip install git+https://github.com/matsengrp/phippery@1.3.0

# install pre-build binary Bowtie1.3
RUN curl -fksSL https://sourceforge.net/projects/bowtie-bio/files/bowtie/1.3.1/bowtie-1.3.1-linux-x86_64.zip \
--output bowtie-1.3.1-linux-x86_64.zip \
&& unzip bowtie-1.3.1-linux-x86_64.zip \
&& (cd /usr/bin/ && ln -s /bowtie-1.3.1-linux-x86_64/* ./)
RUN curl -fksSL https://sourceforge.net/projects/bowtie-bio/files/bowtie/1.3.0/bowtie-1.3.1-linux-x86_64.zip \
--output bowtie-1.3.0-linux-x86_64.zip \
&& unzip bowtie-1.3.0-linux-x86_64.zip \
&& (cd /usr/bin/ && ln -s /bowtie-1.3.0-linux-x86_64/* ./)


# install SAMtools
RUN curl -fksSL https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2 | tar xj && \
cd samtools-1.3.1 && \
RUN curl -fksSL https://github.com/samtools/samtools/releases/download/1.3.0/samtools-1.3.1.tar.bz2 | tar xj && \
cd samtools-1.3.0 && \
make all all-htslib && make install install-htslib

2 changes: 1 addition & 1 deletion phippery/__init__.py
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
# __init__.py


__version__ = "1.2.0"
__version__ = "1.3.0"

from phippery.utils import *
import phippery.normalize
Expand Down
4 changes: 2 additions & 2 deletions pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ build-backend = "setuptools.build_meta"
[project]
name = "phippery"

version = "1.2.0"
version = "1.3.0"

description = "Tools for analyzing PhIP-Seq Data."
readme = "README.md"
Expand Down Expand Up @@ -63,7 +63,7 @@ phippery = "phippery.cli:cli"

[tool.bumpver]

current_version = "1.2.0"
current_version = "1.3.0"

version_pattern = "MAJOR.MINOR.PATCH"
commit_message = "bump version {old_version} -> {new_version}"
Expand Down

0 comments on commit d212fc9

Please sign in to comment.