diff --git a/Dockerfile b/Dockerfile index 739e852..e8d4543 100644 --- a/Dockerfile +++ b/Dockerfile @@ -4,7 +4,7 @@ FROM quay.io/hdc-workflows/ubuntu:20.04 ADD http://date.jsontest.com /etc/builddate LABEL maintainer "Jared Galloway " \ - version "1.2.0" \ + version "1.3.0" \ description "Common PhIP-Seq Workflows" # install needed tools @@ -30,17 +30,17 @@ RUN python3 -m venv $VIRTUAL_ENV ENV PATH="$VIRTUAL_ENV/bin:$PATH" # install phippery -RUN pip install git+https://github.com/matsengrp/phippery@1.2.0 +RUN pip install git+https://github.com/matsengrp/phippery@1.3.0 # install pre-build binary Bowtie1.3 -RUN curl -fksSL https://sourceforge.net/projects/bowtie-bio/files/bowtie/1.3.1/bowtie-1.3.1-linux-x86_64.zip \ - --output bowtie-1.3.1-linux-x86_64.zip \ - && unzip bowtie-1.3.1-linux-x86_64.zip \ - && (cd /usr/bin/ && ln -s /bowtie-1.3.1-linux-x86_64/* ./) +RUN curl -fksSL https://sourceforge.net/projects/bowtie-bio/files/bowtie/1.3.0/bowtie-1.3.1-linux-x86_64.zip \ + --output bowtie-1.3.0-linux-x86_64.zip \ + && unzip bowtie-1.3.0-linux-x86_64.zip \ + && (cd /usr/bin/ && ln -s /bowtie-1.3.0-linux-x86_64/* ./) # install SAMtools -RUN curl -fksSL https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2 | tar xj && \ - cd samtools-1.3.1 && \ +RUN curl -fksSL https://github.com/samtools/samtools/releases/download/1.3.0/samtools-1.3.1.tar.bz2 | tar xj && \ + cd samtools-1.3.0 && \ make all all-htslib && make install install-htslib diff --git a/phippery/__init__.py b/phippery/__init__.py index f4d528c..72e67d7 100644 --- a/phippery/__init__.py +++ b/phippery/__init__.py @@ -1,7 +1,7 @@ # __init__.py -__version__ = "1.2.0" +__version__ = "1.3.0" from phippery.utils import * import phippery.normalize diff --git a/pyproject.toml b/pyproject.toml index b9a7c6b..4dcd9ef 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,7 @@ build-backend = "setuptools.build_meta" [project] name = "phippery" -version = "1.2.0" +version = "1.3.0" description = "Tools for analyzing PhIP-Seq Data." readme = "README.md" @@ -63,7 +63,7 @@ phippery = "phippery.cli:cli" [tool.bumpver] -current_version = "1.2.0" +current_version = "1.3.0" version_pattern = "MAJOR.MINOR.PATCH" commit_message = "bump version {old_version} -> {new_version}"