diff --git a/modules/nf-core/seqkit/fx2tab/environment.yml b/modules/nf-core/seqkit/fx2tab/environment.yml
index 4ad729876ab..66770b103f7 100644
--- a/modules/nf-core/seqkit/fx2tab/environment.yml
+++ b/modules/nf-core/seqkit/fx2tab/environment.yml
@@ -3,4 +3,4 @@ channels:
   - bioconda
   - defaults
 dependencies:
-  - bioconda::seqkit=2.5.0
+  - bioconda::seqkit=2.5.1
diff --git a/modules/nf-core/seqkit/fx2tab/main.nf b/modules/nf-core/seqkit/fx2tab/main.nf
index 5cf9c449e85..0bd99b6f59f 100644
--- a/modules/nf-core/seqkit/fx2tab/main.nf
+++ b/modules/nf-core/seqkit/fx2tab/main.nf
@@ -4,8 +4,8 @@ process SEQKIT_FX2TAB {
 
     conda 'modules/nf-core/seqkit/fx2tab/environment.yml'
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/seqkit:2.5.0--h9ee0642_0' :
-        'biocontainers/seqkit:2.5.0--h9ee0642_0' }"
+        'https://depot.galaxyproject.org/singularity/seqkit:2.5.1--h9ee0642_0' :
+        'biocontainers/seqkit:2.5.1--h9ee0642_0' }"
 
     input:
     tuple val(meta), path(fastx)