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Calculate genome size from an index file #31

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mbhall88 opened this issue Aug 24, 2021 · 1 comment · Fixed by #33
Closed

Calculate genome size from an index file #31

mbhall88 opened this issue Aug 24, 2021 · 1 comment · Fixed by #33
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enhancement New feature or request
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Version 0.6.0

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@mbhall88
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From #14 (comment)

Allow --genome-size to take a faidx file and sum the lengths of all contigs in that index to calculate the genome size.
@mbhall88 mbhall88 added the enhancement New feature or request label Aug 24, 2021
@mbhall88 mbhall88 mentioned this issue Aug 24, 2021
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@mbhall88 mbhall88 added this to the Version 0.6.0 milestone Aug 27, 2021
@mbhall88 mbhall88 mentioned this issue Aug 29, 2021
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@tomazberisa
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Nice addition, thank you! 👍

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enhancement New feature or request
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Version 0.6.0
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Allow genome size to take a FASTA/Q index file mbhall88/rasusa
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@tomazberisa @mbhall88