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Changelog.txt
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Changelog.txt
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Moa 0.11.19 / 2013-09-08
==========================
* many small improvements
* Pelican is deprecated - use: https://github.com/mfiers/Woa
Moa 0.11.18 / 2012-12-02
==========================
* major rework of moa simple, map & reduce - now uses history
* removed moa logging the last command
* moar sorts dirs so that the subdirs are executed in alphanumerical order
* make sure title query is consistent
* removed deprecated code
* set default default to "" catch None as default & use ""
* Additional details in docs for newbies and RHEL package names
Moa 0.11.17 / 2012-11-28
==========================
* moa prepare & finish work again
* removed unset -r from the test suite
Moa 0.11.16 / 2012-11-28
==========================
* Sanity checks on filesets
* added alias mst for moa set title in '. $(moainit)'
Moa 0.11.15 / 2012-11-22
==========================
* vastly improved static pages based on pelican
* works with default pelican 3 now
Moa 0.11.14 / 2012-11-15
==========================
* restored moa cp (recursive was gone)
* introduced set -v in moa simple,map,reduce
* more test scripts
* added documentation on filesets
* added argparse as a prereq
Moa 0.11.13 / 2012-11-13
==========================
* lost of work on the documentation
* forcing a commit -a before running subtree add
* more detail in what files we do want to commit
* updated documentation
* further removed recursive operation (-r)
* improved moa show output
* define pud & ppud as system defined
* make sure title is defined as a project parameter
Moa 0.11.12 / 2012-11-13
==========================
* work on the documentation
* integrated command line completion & profile script
* moved --olC to --oln - that was stupid
Moa 0.11.11 / 2012-11-09
==========================
* better handling of asynchronous jobs
* openlava now cleans up its own jobs after an error
* removed recursive operation
* added a actor function attribute declaring this as a synchronous actor
* command line script to set moa job status
* fixed a stupid openlava bug for max no slots - it's now olC
* removed ruffus error output - was never useful
* removed 'no project found' message
Moa 0.11.10 / 2012-11-08
==========================
* fixed minor bug - include python files for embedded templates
* slightly better error messages
Moa 0.11.9 / 2012-11-08
==========================
* restored 'moa reduce'
* move number of scripts to the blue-ringed-octopus repo
* some cleanup for openlava job scheduler
* added a page on contributing code & documentation
Moa 0.11.8 / 2012-11-06
==========================
* created a script to source if you want to run from the source dir
* added job plugin post_error hook
* created a minimal plugin to store job state using taskwarrior
* introduced unique job ids within the context of a job
Moa 0.11.7 / 2012-11-05
==========================
* reinstated moainit - now returns the location of the moa.sh init script
call using ". `moainit`" in ~/.bashrc
* ./bin/moa command has returned, only for development purposes
* updated installation instructions
Moa 0.11.6 / 2012-10-24
==========================
* Improved installation, works with virtualenv
* better template refresh - based on the metadata
* reworked cli code
* reworked resources system - only using pkg_resources
* moved all static data into the package (moa/data)
* some pep8 cleanup
* renamed source directory from `lib/python/moa` to `moa`
* removed Yaco, fist & frappant to their separate modules
* removed helper scripts from moa core
Moa 0.11.5 / 2012-10-24
==========================
* added changelog & showblog commands
* lots of pep8 code cleanup
* better error messages
* Better docs for `moa set`.
* explicitly enabled template providers
* changed to git subtree (based on: https://github.com/apenwarr/git-subtree)
* can set user system variables using the command line
* send status messages to evernote - using geeknote
Moa 0.11.4 / 2012-10-16
==========================
* Minor fix with installation
Moa 0.11.3 / 2012-10-16
==========================
* fix to work with /usr/local/share/moa for moa data
* improved docs
Moa 0.11.2 / 2012-10-15
==========================
* some code cleanup
* improved installer (that might even work)
Moa 0.11.1 / 2012-10-14
==========================
* lots of (pep8) cleanup
* git repositories as templates
* reworked templates/providers
* new moa.cli for all CLI code
* allowing a default title
* fixed a few unittests
* started using pelican for static website generation - in progress
* reworked changelogs & blog messages - now stored in ./doc/*
* better openlava actor
* Not using os.getcwd - prevent dereferencing of symlinks
* uses TTYtter to send tweets
* better autogenerated changelog messages
* writes exec scripts to ./.moa/tmp now - easier to track
* retains title when running moa new
* better plugin structure - distinguish between job & system plugins
* start drawing images of moa workflows
* track versioning
* moved `fileset` code to the core
* moa mv now works
* new argparse structure - better command line interface
* remoteLogger logs to mysql
Moa 0.10.15 / 2012-01-30
==========================
* slightly updated docs
* allow specific execution of one plugin in the plugin manager
* Defined _pref _next _first _last metavars
* meta variables are now defined in this separate plugin
* added history & bash_histroy to moaFiles
* new version of docs
* removed 'import git'
* check for absence of local_bash_history before touching
* only touch .moa/local_bash_history if .moa is present & writable
Moa 0.10.14 / 2012-01-11
==========================
* added a few map derivates (map2, map22)
* moa.ui prompt now expands paths starting with /
* plugin to maintain project data ( {{_p}} )
* make sure the pluginOrder is copied before sorting - otherwise order is messed up
* safeguard for unsolvable configurations
* cleaned the order of execution a little bit - added prePrepare and postFinish
* do not run the git_finish_* hook if not in a git repository
* better handling of non writable .moa dirs
Moa 0.10.13 / 2012-01-05
==========================
* improved docs
* moa ! works again
* moaGit works a lot better now
* Allows variables to be injected into a job configuration based on a oneliner
* Lots of templates now use Ruff
* Many improvements in the templates
* Basic archiving of jobs
* added alias msp / moa set process
* added a umask plugin
* Improved bash prompt interaction
* automatic registering of job in sysConf
* renamed jobId to runId
* tried to get command completion integrated ... did not work
* defactoring reduce code
* Fixed reused of ruffus object (old bug)
* improving & organizing prepare/run/finish structure of jobs
* lots of cleaning
* Preliminary version of an SGE plugin
* Better implementation of finish/prepare calls
* remove delegate
* Accepts jinja rendered configuration now
* improved tab completion - uses jinja2 expansion
* --bg is now properly silent
* display expanded variables in "moa show"
* prevent jinja expansion of 'process' parameter
* Handles rendered job parameters
* each plugin now has its own directory
* Refactored plugin structure
* Converted a number of functions to the new hook_ structure
* some general information for setup.py
* unittest2 based testing
Moa 0.10.12 / 2011-05-31
==========================
* Improved templates
* Forcing bin/moa to python2.6
* Resolving maps to single filesets (fist)
* Improved moa show, moa files, moa tree output
* Improved the output of moa files
* started moving web code to the plugins
* Allowing seperate template files for commands
* Template dealing with hagfish
* Improved documentation handling
* Allow simple jobs to access job data
Moa 0.10.11 / 2011-05-12
==========================
* produce a graceful message on trying to instantiate an unknown template
* working on docs
* store status in sysConf
* allow jobs to be instantiated from other locations as pwd
* plugin to send mail after competing a job
* improved tree display
* define ansi colors in the config file
Moa 0.10.10 / 2011-05-10
==========================
* jinja2 version of the ncbi template
* recursively defined variables are adapted if they appear to be
a relative path
* rearranged plugin management
* many small fixes improving recursive & multithreaded operation
* implementation of ruff.reduce
* moved bowtiedb template to a reduce type operation
* clear ruffus node log - make sure it starts fresh for each job
Moa 0.10.9 / 2011-05-03
==========================
* fixed all unittests
* removed ruffus logging
* improved docs
* cleaning up
* removed a bug that prevented running ruffus twice (in the case of
-r) - refreshing ruffus before each run
* improved output
* more ansii colors
* moa show now shows if a variable is defined by a parent
(recursively) [#19 state:resolved]
Moa 0.10.8 / 2011-04-28
==========================
* recognize & display moa.report files (as markdown)
* template for fastqc - qc of fastq files and additional reporting
* moved local template provider default directory to ~/.config/moa
* removed usage of snippets in templates - not good for reproducibility
* run fileset preparation before running 'moa files' command
* downloads both genbank & fasta now
* bugfixes
Moa 0.10.7 / 2011-04-27
=======================
* fixed a bug confusing the ~/.moa config dir with a proper moa job
Moa 0.10.6 / 2011-04-27
=======================
* debian pacakaging is deprecated
* better template handling
* added profiling
* reworked how templates are created & found
* improved error handling
* allowing keywords with jinja templates
* bin/moaprompt
* moaGit is working again
* a framework for recursive execuction
* map & simple replaces "adhoc"
* unittests++
* ruff now uses the simpleExecutor
Moa 0.10.5 / 2011-04-27
=======================
* Start keeping a changelog