diff --git a/NEWS.md b/NEWS.md index 58cd8a5..052d63f 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,9 @@ # master (unpublished) +No changes yet + +# v0.15.0 (latest) + ### general - improve sign determination for conditional mutual information tests - remove jld2 support due to stability issues @@ -13,7 +17,7 @@ header positions could not be read - fix bug where zero weights were assigned to highly associated variable pairs in rare cases - fix bug that could lead to the first data column being parsed as row identifiers if it had no duplicate entries -# v0.14.0 (minor, latest) +# v0.14.0 ### general - allow string factors in meta data diff --git a/Project.toml b/Project.toml index 1eab795..ab6519a 100644 --- a/Project.toml +++ b/Project.toml @@ -28,15 +28,15 @@ StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" [compat] Combinatorics = "1" -DataStructures = "0.17"#[0.12.0]" -Distributions = "0.21"#"0.16, 0.21, 0.22" +DataStructures = "0.17" +Distributions = "0.21" FileIO = "1" -HDF5 = "0.12"#"≥ 0.10.0" -JLD2 = "0.1"#"≥ 0.1.0" -JSON = "0.21"#"≥ 0.19.0" +HDF5 = "0.12" +JLD2 = "0.1" +JSON = "0.21" LightGraphs = "1" SimpleWeightedGraphs = "1" -StatsBase = "0.32"#"[0.25.0, 0.32]" +StatsBase = "0.32" julia = "1" [extras] diff --git a/test/preprocessing.jl b/test/preprocessing.jl index 7202f52..3fc5b54 100644 --- a/test/preprocessing.jl +++ b/test/preprocessing.jl @@ -1,13 +1,11 @@ using FlashWeave using StatsBase -#using FileIO using Test using SparseArrays, DelimitedFiles, Statistics data = Matrix{Float64}(readdlm(joinpath("data", "HMP_SRA_gut", "HMP_SRA_gut_small.tsv"), '\t')[2:end, 2:end]) data_sparse = sparse(data) -#exp_dict = load(joinpath("data", "preprocessing_expected.jld2"), "exp_dict") exp_folder = joinpath("data", "preprocessing_expected") exp_dict = Dict{Any,Any}(replace(splitext(file)[1], '_'=>'-') => readdlm(joinpath(exp_folder, file), '\t') for file in readdir(exp_folder))