From 6924f03e4e3c0e30c42e4df8b0e43a2792238e17 Mon Sep 17 00:00:00 2001
From: silask <silas.kieser@gmail.com>
Date: Thu, 5 Oct 2023 15:11:32 +0200
Subject: [PATCH] omit gene annotation

---
 .github/workflows/python-package-conda.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/python-package-conda.yml b/.github/workflows/python-package-conda.yml
index 89dd388c..c6816bab 100644
--- a/.github/workflows/python-package-conda.yml
+++ b/.github/workflows/python-package-conda.yml
@@ -213,12 +213,12 @@ jobs:
       - name: dryrun assembly shold need nothing to be done
         run: |
           ls -l wd
-          atlas run assembly -n
+          atlas run assembly -w wd -n
 
   
       - name: Test Genecatalog
         run: |
-          atlas run genecatalog --resources mem=$MEM java_mem=$MEM --jobs=$N_THREADS --restart-times=2 --working-dir wd
+          atlas run genecatalog --restart-times=2 --working-dir wd --omit-from combine_egg_nogg_annotations combine_dram_genecatalog_annotations 
 
       - name: Store Logs
         uses: actions/upload-artifact@v2
@@ -230,7 +230,7 @@ jobs:
         uses: actions/upload-artifact@v2
         with:
           name: sample_logs
-          path: wd/Sample1/logs
+          path: wd/sample1/logs