run test_init

metagenome-atlas · Aug 17, 2023 · fce58e0 · fce58e0
1 parent 8b9c75c
commit fce58e0
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Showing 2 changed files with 8 additions and 3 deletions.
diff --git a/test/test_ci.sh b/test/test_ci.sh
diff --git a/test/test_init.sh b/test/test_init.sh
@@ -16,7 +16,7 @@ databaseDir="test/databases"
 
 create_reads_dir() {
 
-    local reads_dir="$12"
+    local reads_dir="$1"
     local N=$2
 
 echo "touch reads dir"
@@ -36,15 +36,20 @@ done
 
 
 
-echoe "test to create projects for N samples"
+
 
 for N in 5 10 50 300 ; 
 do
 
-WD="test/test_init/$N"
+echo "test init with  $N samples"
 
+WD="test/test_init/$N"
 reads_dir="test/test_init/reads_${N}_samples/"
 
+rm -rf $WD $reads_dir
+
+
+
 create_reads_dir $reads_dir $N
 
 atlas init --db-dir $databaseDir -w $WD $reads_dir