input.json

{
  "metapro.mapper_list": [
    {
      "genome_dir": "nmdc_omprc-11-wfzppa38",
      "dataset_name": "SpruceW_P4_15A_22Jun17_Pippin_17-04-06",
      "annotation_name": "nmdc_wfmgan-11-pmh0a992.1",
      "raw_file_loc": "/mnt/d/NMDC/reprocessing_spruce_2/nmdc_bsm-13-bgefg837/SpruceW_P4_15A_22Jun17_Pippin_17-04-06.raw",
      "dataset_id": "nmdc_dobj-11-9gcej008",
      "faa_file_loc": "/mnt/d/NMDC/reprocessing_spruce_2/nmdc_bsm-13-bgefg837/nmdc_wfmgan-11-pmh0a992.1_proteins.faa",
      "faa_file_id": "nmdc_dobj-11-j5mh8584",
      "gff_file_loc": "/mnt/d/NMDC/reprocessing_spruce_2/nmdc_bsm-13-bgefg837/nmdc_wfmgan-11-pmh0a992.1_functional_annotation.gff",
      "gff_file_id": "nmdc_dobj-11-jq8ct440"
    },
    {
      "genome_dir": "nmdc_omprc-11-ar7xyy02",
      "dataset_name": "SpruceW_P13_87B_22Jun17_Pippin_17-04-06",
      "annotation_name": "nmdc_wfmgan-11-78nfyt10.1",
      "raw_file_loc": "/mnt/d/NMDC/reprocessing_spruce_2/nmdc_bsm-13-h3hs0w34/SpruceW_P13_87B_22Jun17_Pippin_17-04-06.raw",
      "dataset_id": "nmdc_dobj-11-rjpqdg61",
      "faa_file_loc": "/mnt/d/NMDC/reprocessing_spruce_2/nmdc_bsm-13-h3hs0w34/nmdc_wfmgan-11-78nfyt10.1_proteins.faa",
      "faa_file_id": "nmdc_dobj-11-ebf2vr37",
      "gff_file_loc": "/mnt/d/NMDC/reprocessing_spruce_2/nmdc_bsm-13-h3hs0w34/nmdc_wfmgan-11-78nfyt10.1_functional_annotation.gff",
      "gff_file_id": "nmdc_dobj-11-t6g94b08"
    }
  ],
  "metapro.MASIC_PARAM_FILE_LOC": "/mnt/d/NMDC/reprocessing_spruce_2/LTQ-FT_10ppm_2014-08-06.xml",
  "metapro.MSGFPLUS_PARAM_FILE_LOC": "/mnt/d/NMDC/reprocessing_spruce_2/MSGFPlus_Tryp_NoMods_20ppmParTol.txt",
  "metapro.CONTAMINANT_FILE_LOC": "/mnt/d/NMDC/reprocessing_spruce_2/Tryp_Pig_Bov.fasta",
  "metapro.QVALUE_THRESHOLD": "0.05",
  "metapro.STUDY": "spruce",
  "metapro.EXECUTION_RESOURCE": "EMSL",
  "metapro.DATA_URL": "https://nmdcdemo.emsl.pnnl.gov/proteomics/results/",
  "metapro.MASIC_PARAM_FILE_ID": "nmdc_dobj-11-hfx93f93",
  "metapro.MSGFPLUS_PARAM_FILE_ID": "nmdc_dobj-11-h9637w90",
  "metapro.CONTAMINANT_FILE_ID": "nmdc_dobj-11-sprrem27"
}