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Refactor metaP aggregation #26

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kheal opened this issue Nov 7, 2024 · 1 comment · May be fixed by #27
Open

Refactor metaP aggregation #26

kheal opened this issue Nov 7, 2024 · 1 comment · May be fixed by #27
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@kheal
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kheal commented Nov 7, 2024 •
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We've decided to rewrite how the metaproteomics data are being aggregated.

Goals of the script

  1. Write to the functional_aggreagation_agg collection
  2. Use the API, reduce reliance with direct connection to MongoDB
  3. Access the raw protein reports (not just the mongo data) to generate the records
  4. Validate and submit data via API
@kheal kheal linked a pull request Nov 7, 2024 that will close this issue
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@kheal kheal linked a pull request Nov 7, 2024 that will close this issue
Refactor metaproteomics aggregation script #27
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aclum commented Nov 7, 2024

2 & 4 overlaps with #11 so feel free to close or assign to yourself as a subtask.

This was referenced Nov 7, 2024
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@kheal kheal self-assigned this Nov 19, 2024
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2024 - Sprint 50 - November 18 - 29, 2024
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Refactor metaproteomics aggregation script microbiomedata/nmdc-aggregator
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