DATASET.md

BiomedParseData

BiomedParseData was created from preprocessing publicly available biomedical image segmentation datasets.

These datasets are provided pre-formatted for convenience. For additional information about the datasets or their licenses, please reach out to the owners:

Dataset	URL
amos22	https://amos22.grand-challenge.org/
MSD (Medical Segmentation Decathlon)	http://medicaldecathlon.com/
KiTS23	https://github.com/neheller/kits23
BTCV	https://www.synapse.org/#!Synapse:syn3193805/wiki/217790
COVID-19 CT	https://www.kaggle.com/datasets/andrewmvd/covid19-ct-scans
LIDR-IDRI	https://wiki.cancerimagingarchive.net/display/Public/LIDC-IDRI
ACDC	https://www.creatis.insa-lyon.fr/Challenge/acdc/databases.html
M&Ms	https://www.ub.edu/mnms/
PROMISE12	cite https://doi.org/10.1016/j.media.2013.12.002
LGG	https://www.kaggle.com/datasets/mateuszbuda/lgg-mri-segmentation
COVID-QU-Ex	https://www.kaggle.com/datasets/anasmohammedtahir/covidqu
QaTa-COV19	https://www.kaggle.com/datasets/aysendegerli/qatacov19-dataset
SIIM-ACR Pneumothorax Segmentation	https://www.kaggle.com/datasets/vbookshelf/pneumothorax-chest-xray-images-and-masks
Chest Xray Masks and Labels Dataset	https://datasetninja.com/chest-xray
COVID-19 Radiography Database	https://www.kaggle.com/datasets/tawsifurrahman/covid19-radiography-database
CAMUS	https://www.creatis.insa-lyon.fr/Challenge/camus/index.html
BUSI	https://scholar.cu.edu.eg/?q=afahmy/pages/dataset
FH-PS-AOP	https://zenodo.org/records/7851339#.ZEH6eHZBztU
CDD-CESM	https://www.cancerimagingarchive.net/collection/cdd-cesm/
PolypGen	https://www.synapse.org/#!Synapse:syn26376615/wiki/613312
NeoPolyp	https://www.kaggle.com/c/bkai-igh-neopolyp/data
ISIC 2018	https://challenge2018.isic-archive.com/task1/
UwaterlooSkinCancer	Skin Cancer Detection | Vision and Image Processing Lab | University of Waterloo
OCT-CME	https://www.kaggle.com/datasets/zeeshanahmed13/intraretinal-cystoid-fluid
REFUGE	https://bitbucket.org/woalsdnd/refuge/src
G1020	https://www.dfki.uni-kl.de/g1020
DRIVE	https://drive.grand-challenge.org/
GlaS	https://warwick.ac.uk/fac/cross_fac/tia/data/glascontest/
PanNuke	https://jgamper.github.io/PanNukeDataset/
FUMPE	https://figshare.com/collections/FUMPE/4107803/1
TotalSegmentator	https://github.com/wasserth/TotalSegmentator
BraTS2023	https://www.synapse.org/#!Synapse:syn51156910/wiki/621282
AbdomenCT-1K	https://github.com/JunMa11/AbdomenCT-1K
US Simulation & Segmentation	https://www.kaggle.com/datasets/ignaciorlando/ussimandsegm
CDD-CESM	https://www.cancerimagingarchive.net/collection/cdd-cesm/