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environment.yml
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environment.yml
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name: biomedparse
channels:
- pytorch
- nvidia
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- blas=1.0=mkl
- brotli-python=1.0.9=py39h6a678d5_8
- bzip2=1.0.8=h5eee18b_6
- ca-certificates=2024.7.2=h06a4308_0
- certifi=2024.7.4=py39h06a4308_0
- charset-normalizer=3.3.2=pyhd3eb1b0_0
- cuda-cudart=12.4.127=0
- cuda-cupti=12.4.127=0
- cuda-libraries=12.4.0=0
- cuda-nvrtc=12.4.127=0
- cuda-nvtx=12.4.127=0
- cuda-opencl=12.6.37=0
- cuda-runtime=12.4.0=0
- cuda-version=12.6=3
- ffmpeg=4.3=hf484d3e_0
- filelock=3.13.1=py39h06a4308_0
- freetype=2.12.1=h4a9f257_0
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py39heeb90bb_0
- gnutls=3.6.15=he1e5248_0
- idna=3.7=py39h06a4308_0
- intel-openmp=2023.1.0=hdb19cb5_46306
- jinja2=3.1.4=py39h06a4308_0
- jpeg=9e=h5eee18b_3
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=3.0=h295c915_0
- libcublas=12.4.2.65=0
- libcufft=11.2.0.44=0
- libcufile=1.11.0.15=0
- libcurand=10.3.7.37=0
- libcusolver=11.6.0.99=0
- libcusparse=12.3.0.142=0
- libdeflate=1.17=h5eee18b_1
- libffi=3.4.4=h6a678d5_1
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libiconv=1.16=h5eee18b_3
- libidn2=2.3.4=h5eee18b_0
- libjpeg-turbo=2.0.0=h9bf148f_0
- libnpp=12.2.5.2=0
- libnvfatbin=12.6.20=0
- libnvjitlink=12.4.99=0
- libnvjpeg=12.3.1.89=0
- libpng=1.6.39=h5eee18b_0
- libstdcxx-ng=11.2.0=h1234567_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.5.1=h6a678d5_0
- libunistring=0.9.10=h27cfd23_0
- libwebp-base=1.3.2=h5eee18b_0
- llvm-openmp=14.0.6=h9e868ea_0
- lz4-c=1.9.4=h6a678d5_1
- markupsafe=2.1.3=py39h5eee18b_0
- mkl=2023.1.0=h213fc3f_46344
- mkl-service=2.4.0=py39h5eee18b_1
- mkl_fft=1.3.8=py39h5eee18b_0
- mkl_random=1.2.4=py39hdb19cb5_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpmath=1.3.0=py39h06a4308_0
- ncurses=6.4=h6a678d5_0
- nettle=3.7.3=hbbd107a_1
- networkx=3.2.1=py39h06a4308_0
- openh264=2.1.1=h4ff587b_0
- openjpeg=2.5.2=he7f1fd0_0
- openssl=3.0.14=h5eee18b_0
- pip=24.2=py39h06a4308_0
- pysocks=1.7.1=py39h06a4308_0
- python=3.9.19=h955ad1f_1
- pytorch=2.4.0=py3.9_cuda12.4_cudnn9.1.0_0
- pytorch-cuda=12.4=hc786d27_6
- pytorch-mutex=1.0=cuda
- pyyaml=6.0.1=py39h5eee18b_0
- readline=8.2=h5eee18b_0
- requests=2.32.3=py39h06a4308_0
- setuptools=72.1.0=py39h06a4308_0
- sqlite=3.45.3=h5eee18b_0
- sympy=1.12=py39h06a4308_0
- tbb=2021.8.0=hdb19cb5_0
- tk=8.6.14=h39e8969_0
- torchaudio=2.4.0=py39_cu124
- torchtriton=3.0.0=py39
- torchvision=0.19.0=py39_cu124
- typing_extensions=4.11.0=py39h06a4308_0
- tzdata=2024a=h04d1e81_0
- urllib3=2.2.2=py39h06a4308_0
- wheel=0.43.0=py39h06a4308_0
- xz=5.4.6=h5eee18b_1
- yaml=0.2.5=h7b6447c_0
- zlib=1.2.13=h5eee18b_1
- zstd=1.5.5=hc292b87_2
- pip:
- accelerate==0.23.0
- antlr4-python3-runtime==4.9.3
- appdirs==1.4.4
- black==21.4b2
- open-clip-torch==2.26.1
- cloudpickle==3.0.0
- cython==3.0.2
- deepspeed==0.10.3
- git+https://github.com/MaureenZOU/detectron2-xyz.git
- diffdist==0.1
- einops==0.8.0
- ftfy==6.1.1
- fvcore==0.1.5.post20221221
- hjson==3.1.0
- huggingface-hub==0.17.3
- hydra-core==1.3.2
- imageio==2.35.1
- infinibatch==0.1.1
- iopath==0.1.9
- json-tricks==3.17.3
- kornia==0.7.0
- mpi4py==3.1.5
- mup==1.0.0
- mypy-extensions==1.0.0
- ninja==1.11.1.1
- nltk==3.8.1
- numpy==1.23.1
- omegaconf==2.3.0
- opencv-python==4.8.1.78
- pandas==2.0.3
- pathspec==0.12.1
- pillow==9.4.0
- portalocker==2.10.1
- py-cpuinfo==9.0.0
- pycocotools==2.0.7
- pydantic==1.10.18
- pydot==3.0.1
- regex==2023.10.3
- scikit-image==0.21.0
- scikit-learn==1.3.1
- sentencepiece==0.1.99
- tabulate==0.9.0
- termcolor==2.4.0
- timm==0.4.12
- tokenizers==0.14.1
- transformers==4.34.0
- vision-datasets==0.2.2
- yacs==0.1.8
prefix: /home/theodorezhao/miniconda3/envs/biomedparse