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Regression: Extension hangs at startup at "reactivating terminal message", spinner loops indefinitely #23982

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corneliusroemer opened this issue Aug 21, 2024 · 9 comments
Closed

Regression: Extension hangs at startup at "reactivating terminal message", spinner loops indefinitely #23982

corneliusroemer opened this issue Aug 21, 2024 · 9 comments
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@DonJayamanne
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area-native-locator Issues with Rust based python locator bug Issue identified by VS Code Team member as probable bug experimenting Feature is part of an experiment regression Bug didn't exist in a previous release triage-needed Needs assignment to the proper sub-team verified Verification succeeded

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@corneliusroemer
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corneliusroemer commented Aug 21, 2024 •
edited
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Type: Bug

Unfortunately the issue #23968 #23963 has come back, version: v2024.13.2024082001 (pre-release)

Locator is set to native. The workaround with js works but only after a relatively long load time this time (5-10 seconds)

When starting vscode, Python extension never finishes loading, gets stuck at "Reactivating terminals".

image
Python log 
2024-08-21 11:54:57.593 [info] Experiment 'pythonaacf' is active
2024-08-21 11:54:57.593 [info] Experiment 'pythonCreateEnvOnPipInstall' is active
2024-08-21 11:54:57.593 [info] Experiment 'pythonRecommendTensorboardExt' is active
2024-08-21 11:54:57.593 [info] Experiment 'pythonTerminalEnvVarActivation' is active
2024-08-21 11:54:57.593 [info] Experiment 'pythonTestAdapter' is active
2024-08-21 11:54:57.593 [info] Native locator: Refresh started
2024-08-21 11:54:57.593 [info] Default formatter is set to charliermarsh.ruff for workspace /Users/corneliusromer/code/loculus
2024-08-21 11:54:57.647 [info] > pyenv which python
2024-08-21 11:54:57.647 [info] cwd: .
2024-08-21 11:54:57.956 [warning] Unknown environment manager: Poetry
2024-08-21 11:54:57.960 [error] [
  'Failed to check whether to display prompt for conda inherit env setting, Class name = v, completed in 206ms, has a falsy return value, Arg 1: <Uri:/Users/corneliusromer/code/loculus>, Return Value: undefined',
  [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
  	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
  	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
  	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
  	at process.processImmediate (node:internal/timers:478:21)] {
    code: -4,
    data: undefined
  }
]
2024-08-21 11:54:57.960 [error] [
  'getActivatedEnvironmentVariables, Class name = D, completed in 206ms, has a falsy return value, Arg 1: <Uri:/Users/corneliusromer/code/loculus>, Arg 2: undefined, Arg 3: undefined, Arg 4: "/bin/zsh"',
  [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
  	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
  	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
  	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
  	at process.processImmediate (node:internal/timers:478:21)] {
    code: -4,
    data: undefined
  }
]
2024-08-21 11:54:57.960 [error] Failed to apply terminal env vars undefined [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
	at process.processImmediate (node:internal/timers:478:21)] {
  code: -4,
  data: undefined
}
2024-08-21 11:54:57.960 [error] Python Extension: interpreterManager.refresh [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
	at process.processImmediate (node:internal/timers:478:21)] {
  code: -4,
  data: undefined
}
2024-08-21 11:54:57.960 [error] [
  'Failed to intialize conda inherit env prompt, Class name = v, completed in 207ms, has a falsy return value, Arg 1: <Uri:/Users/corneliusromer/code/loculus>, Return Value: undefined',
  [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
  	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
  	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
  	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
  	at process.processImmediate (node:internal/timers:478:21)] {
    code: -4,
    data: undefined
  }
]
2024-08-21 11:54:57.960 [error] [
  'Failed to activate a workspace, Class name = m, completed in 389ms, has a falsy return value, Arg 1: <Uri:/Users/corneliusromer/code/loculus>, Arg 2: {"started":1724234097480}, Return Value: undefined',
  [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
  	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
  	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
  	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
  	at process.processImmediate (node:internal/timers:478:21)] {
    code: -4,
    data: undefined
  }
]
2024-08-21 11:54:57.960 [error] Failure during activation. [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
	at process.processImmediate (node:internal/timers:478:21)] {
  code: -4,
  data: undefined
}
2024-08-21 11:54:57.960 [error] sendStartupTelemetry() failed. [s [Error]: Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
	at ae (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1966677)
	at oe (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1964637)
	at Immediate.<anonymous> (/Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/out/client/extension.js:2:1960931)
	at process.processImmediate (node:internal/timers:478:21)] {
  code: -4,
  data: undefined
}
2024-08-21 11:54:58.054 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/bin/conda
2024-08-21 11:54:58.575 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/conda
2024-08-21 11:54:58.688 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/conda
2024-08-21 11:54:58.748 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/conda
2024-08-21 11:54:58.751 [info] Conda environment manager found at: /Users/corneliusromer/miniforge3/bin/conda
2024-08-21 11:54:58.753 [info] Conda environment manager found at: /Users/corneliusromer/Miniforge3/bin/conda
2024-08-21 11:54:58.757 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/smithy/bin/conda
2024-08-21 11:54:58.769 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/conda
2024-08-21 11:54:58.769 [info] Conda environment manager found at: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/conda
2024-08-21 11:54:58.772 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/conda
2024-08-21 11:54:58.777 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/pango3116/bin/conda
2024-08-21 11:54:58.779 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/snakemake-test/bin/conda
2024-08-21 11:54:58.783 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/pango402/bin/conda
2024-08-21 11:54:58.784 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/vcftools-build/bin/conda
2024-08-21 11:54:58.785 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/bioconda/bin/conda
2024-08-21 11:54:58.786 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/conda
2024-08-21 11:54:58.787 [info] Conda environment manager found at: /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/conda
2024-08-21 11:54:58.799 [info] Conda environment manager found at: /Users/corneliusromer/code/conda-base/.dev-env/bin/conda
2024-08-21 11:54:58.804 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/conda
2024-08-21 11:54:58.829 [info] Conda environment manager found at: /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/conda
2024-08-21 11:54:58.833 [info] Native locator: Refresh finished in 1313 ms
@corneliusroemer
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Python Locator.log 
2024-08-21 11:54:57.593 [info] Starting Python Locator /Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/python-env-tools/bin/pet server
2024-08-21 11:54:57.956 [info] Discovered manager: (Poetry) /Library/Frameworks/Python.framework/Versions/3.11/bin/poetry
2024-08-21 11:54:57.958 [error] Failed to execute Python to resolve info "/Users/corneliusromer/micromamba/envs/py12": Permission denied (os error 13)
2024-08-21 11:54:57.958 [warning] Unknown Python Env "/Users/corneliusromer/micromamba/envs/py12"
2024-08-21 11:54:57.958 [error] Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
2024-08-21 11:54:57.961 [info] Discovered env: /Library/Frameworks/Python.framework/Versions/3.12/bin/python3
2024-08-21 11:54:57.962 [info] Discovered env: /Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12
2024-08-21 11:54:57.967 [info] Resolved /Library/Frameworks/Python.framework/Versions/3.12/bin/python3
2024-08-21 11:54:57.975 [info] Resolved /Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12
2024-08-21 11:54:57.981 [info] Discovered env: /Users/corneliusromer/.local/share/virtualenvs/ncov-ingest-PlHIQus7/bin/python
2024-08-21 11:54:57.988 [info] Discovered env: /Library/Developer/CommandLineTools/usr/bin/python3
2024-08-21 11:54:57.992 [info] Discovered env: /usr/local/bin/python3
2024-08-21 11:54:58.004 [info] Env ("/opt/local/bin/python3.10") in Path resolved as ResolvedPythonEnv { executable: "/opt/local/bin/python3.10", prefix: "/opt/local/Library/Frameworks/Python.framework/Versions/3.10", version: "3.10.13.final.0", is64_bit: true, symlinks: Some(["/opt/local/bin/python3.10"]) } and reported as Some(GlobalPaths)
2024-08-21 11:54:58.006 [info] Discovered env: /usr/local/bin/python3.12
2024-08-21 11:54:58.006 [info] Discovered env: /Users/corneliusromer/.virtualenvs/ena-read-docs/bin/python
2024-08-21 11:54:58.007 [info] Discovered env: /opt/local/bin/python3.10
2024-08-21 11:54:58.009 [info] Env ("/opt/local/bin/python3.11") in Path resolved as ResolvedPythonEnv { executable: "/opt/local/bin/python3.11", prefix: "/opt/local/Library/Frameworks/Python.framework/Versions/3.11", version: "3.11.7.final.0", is64_bit: true, symlinks: Some(["/opt/local/bin/python3.11"]) } and reported as Some(GlobalPaths)
2024-08-21 11:54:58.012 [info] Discovered env: /opt/local/bin/python3.11
2024-08-21 11:54:58.019 [info] Resolved Python Environment /opt/homebrew/Caskroom/miniforge/base/bin/python
2024-08-21 11:54:58.037 [warning] Unable to find conda package Python in "/Users/corneliusromer/.pixi/envs/python", trying slower approach
2024-08-21 11:54:58.044 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/.pixi/envs/python", executable: Some("/Users/corneliusromer/.pixi/envs/python/bin/python"), version: Some("3.12.2"), conda_dir: None, arch: None }
2024-08-21 11:54:58.047 [info] Discovered env: /Users/corneliusromer/.pixi/envs/python/bin/python
2024-08-21 11:54:58.048 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm64", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.051 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python
2024-08-21 11:54:58.054 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/bin/conda
2024-08-21 11:54:58.055 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/bioconda-64/bin/python
2024-08-21 11:54:58.057 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py12", executable: Some("/Users/corneliusromer/micromamba/envs/py12/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.059 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py12/bin/python
2024-08-21 11:54:58.091 [info] Discovered env: /usr/bin/python3
2024-08-21 11:54:58.304 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_h_env", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.309 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextclade", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.311 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm64", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.319 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.322 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/gofasta", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.375 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/matchspec
2024-08-21 11:54:58.382 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/osxtest", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.385 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-submission", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-submission/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.390 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/cmaple", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.390 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/poseidon", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.393 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_16", executable: Some("/Users/corneliusromer/micromamba/envs/s8_16/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.399 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextstrain-base", executable: Some("/Users/corneliusromer/micromamba/envs/nextstrain-base/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.408 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_build_env", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.415 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/khipu", executable: Some("/Users/corneliusromer/micromamba/envs/khipu/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.423 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/otd", executable: Some("/Users/corneliusromer/micromamba/envs/otd/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.425 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pypy-arm", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.428 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/ldc", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur-dev", executable: Some("/Users/corneliusromer/micromamba/envs/augur-dev/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py12", executable: Some("/Users/corneliusromer/micromamba/envs/py12/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.433 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7_3_2", executable: Some("/Users/corneliusromer/micromamba/envs/s7_3_2/bin/python"), version: Some("3.10.14"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nbdevcf", executable: Some("/Users/corneliusromer/micromamba/envs/nbdevcf/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.439 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/obecni", executable: Some("/Users/corneliusromer/micromamba/envs/obecni/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/fhdev", executable: Some("/Users/corneliusromer/micromamba/envs/fhdev/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/test", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.442 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/tsv-utils", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.442 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/snakemake", executable: Some("/Users/corneliusromer/micromamba/envs/snakemake/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.443 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/polars", executable: Some("/Users/corneliusromer/micromamba/envs/polars/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.443 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree-cmaple", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.443 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur-dev-arm", executable: Some("/Users/corneliusromer/micromamba/envs/augur-dev-arm/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.444 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextclade-sc2", executable: Some("/Users/corneliusromer/micromamba/envs/nextclade-sc2/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.444 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_", executable: Some("/Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_/bin/python"), version: Some("3.8.15"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.444 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-test", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.445 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_18", executable: Some("/Users/corneliusromer/micromamba/envs/s8_18/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.445 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-nextclade/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.446 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/mamba", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.447 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/xopen", executable: Some("/Users/corneliusromer/micromamba/envs/xopen/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.448 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/treetime", executable: Some("/Users/corneliusromer/micromamba/envs/treetime/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.450 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/mpox-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/mpox-nextclade/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.451 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/miniwdl", executable: Some("/Users/corneliusromer/micromamba/envs/miniwdl/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.451 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/clangdev", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.453 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_", executable: Some("/Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_/bin/python"), version: Some("3.8.15"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.456 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nbdev", executable: Some("/Users/corneliusromer/micromamba/envs/nbdev/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.458 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-ingest", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-ingest/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.459 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_17", executable: Some("/Users/corneliusromer/micromamba/envs/s8_17/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.460 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py36-64", executable: Some("/Users/corneliusromer/micromamba/envs/py36-64/bin/python"), version: Some("3.6.15"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.462 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/sreality", executable: Some("/Users/corneliusromer/micromamba/envs/sreality/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.465 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.468 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/tsv-utils-bioconda", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.468 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/smdpcli", executable: Some("/Users/corneliusromer/micromamba/envs/smdpcli/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.472 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/codespell", executable: Some("/Users/corneliusromer/micromamba/envs/codespell/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.475 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/trimadap", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.477 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur", executable: Some("/Users/corneliusromer/micromamba/envs/augur/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.480 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nwkfmtdev", executable: Some("/Users/corneliusromer/micromamba/envs/nwkfmtdev/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.482 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/usher", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.484 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/auspice", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.486 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/cdk8s", executable: Some("/Users/corneliusromer/micromamba/envs/cdk8s/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.486 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_18py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_18py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.486 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/biopython", executable: Some("/Users/corneliusromer/micromamba/envs/biopython/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.487 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_10", executable: Some("/Users/corneliusromer/micromamba/envs/s8_10/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.491 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7py11", executable: Some("/Users/corneliusromer/micromamba/envs/s7py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.491 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/snakemake-dev", executable: Some("/Users/corneliusromer/micromamba/envs/snakemake-dev/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.492 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7_32", executable: Some("/Users/corneliusromer/micromamba/envs/s7_32/bin/python"), version: Some("3.9.19"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.496 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/fh", executable: Some("/Users/corneliusromer/micromamba/envs/fh/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.498 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/basetest", executable: Some("/Users/corneliusromer/micromamba/envs/basetest/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.499 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/mamba/build/envs/test", executable: Some("/Users/corneliusromer/code/mamba/build/envs/test/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.501 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/grayskull", executable: Some("/Users/corneliusromer/micromamba/envs/grayskull/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.502 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/email-validator", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.504 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/lapis-silo", executable: Some("/Users/corneliusromer/micromamba/envs/lapis-silo/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.512 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pl019", executable: Some("/Users/corneliusromer/micromamba/envs/pl019/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.513 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pc", executable: Some("/Users/corneliusromer/micromamba/envs/pc/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.514 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/hyphy-x86", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.514 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/raxml", executable: Some("/Users/corneliusromer/micromamba/envs/raxml/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.515 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy=7.3.11
2024-08-21 11:54:58.516 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/build-raxml", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.516 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/zstdtest", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.516 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/Miniforge3/conda-bld/simplejson_1719492293018/_build_env", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.517 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/hyphy", executable: Some("/Users/corneliusromer/micromamba/envs/hyphy/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.520 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/throwaway", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.520 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_13py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_13py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.521 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py39-test", executable: Some("/Users/corneliusromer/micromamba/envs/py39-test/bin/python"), version: Some("3.9.19"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.521 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pathoplexus-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/pathoplexus-nextclade/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.522 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/related-issues", executable: Some("/Users/corneliusromer/micromamba/envs/related-issues/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.522 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py38-test", executable: Some("/Users/corneliusromer/micromamba/envs/py38-test/bin/python"), version: Some("3.8.19"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.523 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/flu_frequencies_test", executable: Some("/Users/corneliusromer/micromamba/envs/flu_frequencies_test/bin/python"), version: Some("3.10.12"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.523 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/matchspec", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:54:58.524 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/test1", executable: Some("/Users/corneliusromer/micromamba/envs/test1/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.525 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_1py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_1py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.526 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/sdow-backend", executable: Some("/Users/corneliusromer/micromamba/envs/sdow-backend/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.527 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_10py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_10py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.528 [info] Discovered env: /Users/corneliusromer/micromamba/envs/zstdtest
2024-08-21 11:54:58.529 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/lr_quant_benchmark", executable: Some("/Users/corneliusromer/micromamba/envs/lr_quant_benchmark/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.529 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/flu_frequencies", executable: Some("/Users/corneliusromer/micromamba/envs/flu_frequencies/bin/python"), version: Some("3.10.12"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.531 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy-arm
2024-08-21 11:54:58.532 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree-native", executable: Some("/Users/corneliusromer/micromamba/envs/iqtree-native/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.534 [info] Discovered env: /Users/corneliusromer/micromamba/envs/gofasta
2024-08-21 11:54:58.535 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextclade
2024-08-21 11:54:58.535 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree
2024-08-21 11:54:58.537 [info] Discovered env: /Users/corneliusromer/micromamba/envs/tsv-utils-bioconda
2024-08-21 11:54:58.540 [info] Discovered env: /Users/corneliusromer/micromamba/envs/tsv-utils
2024-08-21 11:54:58.541 [info] Discovered env: /Users/corneliusromer/micromamba/envs/email-validator
2024-08-21 11:54:58.542 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/conda-base
2024-08-21 11:54:58.543 [info] Discovered env: /Users/corneliusromer/micromamba/envs/poseidon
2024-08-21 11:54:58.544 [info] Discovered env: /Users/corneliusromer/micromamba/envs/test
2024-08-21 11:54:58.546 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pypy-arm
2024-08-21 11:54:58.548 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/auspice
2024-08-21 11:54:58.549 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-test
2024-08-21 11:54:58.551 [info] Discovered env: /Users/corneliusromer/micromamba/envs/cmaple
2024-08-21 11:54:58.552 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py38-test/bin/python
2024-08-21 11:54:58.553 [info] Discovered env: /Users/corneliusromer/micromamba/envs/trimadap
2024-08-21 11:54:58.553 [info] Discovered env: /Users/corneliusromer/micromamba/envs/throwaway
2024-08-21 11:54:58.554 [info] Discovered env: /Users/corneliusromer/micromamba/envs/matchspec
2024-08-21 11:54:58.555 [info] Discovered env: /Users/corneliusromer/micromamba/envs/xopen/bin/python
2024-08-21 11:54:58.556 [info] Discovered env: /Users/corneliusromer/micromamba/envs/osxtest
2024-08-21 11:54:58.557 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree-cmaple
2024-08-21 11:54:58.559 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_18/bin/python
2024-08-21 11:54:58.559 [info] Discovered env: /Users/corneliusromer/micromamba/envs/build-raxml
2024-08-21 11:54:58.560 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/auspice-dev
2024-08-21 11:54:58.560 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/bin/python
2024-08-21 11:54:58.561 [info] Discovered env: /Users/corneliusromer/micromamba/envs/codespell/bin/python
2024-08-21 11:54:58.561 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-nextclade/bin/python
2024-08-21 11:54:58.562 [info] Discovered env: /Users/corneliusromer/micromamba/envs/auspice
2024-08-21 11:54:58.562 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pc/bin/python
2024-08-21 11:54:58.564 [info] Discovered env: /Users/corneliusromer/micromamba/envs/hyphy-x86
2024-08-21 11:54:58.565 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nwkfmtdev/bin/python
2024-08-21 11:54:58.565 [info] Discovered env: /Users/corneliusromer/micromamba/envs/lapis-silo/bin/python
2024-08-21 11:54:58.565 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py36-64/bin/python
2024-08-21 11:54:58.566 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy/bin/python
2024-08-21 11:54:58.567 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_10/bin/python
2024-08-21 11:54:58.568 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_10py11/bin/python
2024-08-21 11:54:58.569 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/taxonium/bin/python
2024-08-21 11:54:58.569 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pyfastx/bin/python
2024-08-21 11:54:58.569 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_1py11/bin/python
2024-08-21 11:54:58.571 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/aliasor/bin/python
2024-08-21 11:54:58.572 [info] Discovered env: /Users/corneliusromer/micromamba/envs/related-issues/bin/python
2024-08-21 11:54:58.573 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-submission/bin/python
2024-08-21 11:54:58.574 [info] Discovered env: /Users/corneliusromer/micromamba/envs/test1/bin/python
2024-08-21 11:54:58.575 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/conda
2024-08-21 11:54:58.576 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/python
2024-08-21 11:54:58.578 [info] Discovered env: /Users/corneliusromer/micromamba/envs/miniwdl/bin/python
2024-08-21 11:54:58.580 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/managed-conda/bin/python
2024-08-21 11:54:58.581 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_16py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_16py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.584 [info] Discovered env: /Users/corneliusromer/micromamba/envs/sdow-backend/bin/python
2024-08-21 11:54:58.590 [info] Discovered env: /Users/corneliusromer/micromamba/envs/treetime/bin/python
2024-08-21 11:54:58.591 [info] Discovered env: /Users/corneliusromer/micromamba/envs/cdk8s/bin/python
2024-08-21 11:54:58.593 [info] Discovered env: /Users/corneliusromer/micromamba/envs/obecni/bin/python
2024-08-21 11:54:58.610 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pathoplexus-nextclade/bin/python
2024-08-21 11:54:58.619 [info] Discovered env: /Users/corneliusromer/micromamba/envs/fhdev/bin/python
2024-08-21 11:54:58.623 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/grayskullenv/bin/python
2024-08-21 11:54:58.625 [info] Discovered env: /Users/corneliusromer/micromamba/envs/ldc
2024-08-21 11:54:58.626 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/testenv
2024-08-21 11:54:58.627 [info] Discovered env: /Users/corneliusromer/micromamba/envs/khipu/bin/python
2024-08-21 11:54:58.628 [info] Discovered env: /Users/corneliusromer/micromamba/envs/biopython/bin/python
2024-08-21 11:54:58.629 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/snakefmt/bin/python
2024-08-21 11:54:58.629 [info] Discovered env: /Users/corneliusromer/micromamba/envs/polars/bin/python
2024-08-21 11:54:58.632 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_13py11/bin/python
2024-08-21 11:54:58.633 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur-dev-arm/bin/python
2024-08-21 11:54:58.635 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree-native/bin/python
2024-08-21 11:54:58.636 [info] Discovered env: /Users/corneliusromer/micromamba/envs/grayskull/bin/python
2024-08-21 11:54:58.637 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pl019/bin/python
2024-08-21 11:54:58.638 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/xopen-arm", executable: Some("/Users/corneliusromer/micromamba/envs/xopen-arm/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.641 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_16/bin/python
2024-08-21 11:54:58.643 [info] Discovered env: /Users/corneliusromer/micromamba/envs/otd/bin/python
2024-08-21 11:54:58.643 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py39-test/bin/python
2024-08-21 11:54:58.645 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/default", executable: Some("/Users/corneliusromer/micromamba/envs/default/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.645 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-ena", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-ena/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:54:58.646 [info] Discovered env: /Users/corneliusromer/Miniforge3/conda-bld/simplejson_1719492293018/_build_env
2024-08-21 11:54:58.647 [info] Discovered env: /Users/corneliusromer/micromamba/envs/mamba
2024-08-21 11:54:58.648 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/treetime9/bin/python
2024-08-21 11:54:58.649 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7_32/bin/python
2024-08-21 11:54:58.650 [info] Discovered env: /Users/corneliusromer/micromamba/envs/hyphy/bin/python
2024-08-21 11:54:58.651 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nbdevcf/bin/python
2024-08-21 11:54:58.651 [info] Discovered env: /Users/corneliusromer/micromamba/envs/lr_quant_benchmark/bin/python
2024-08-21 11:54:58.652 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_18py11/bin/python
2024-08-21 11:54:58.653 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7_3_2/bin/python
2024-08-21 11:54:58.653 [info] Discovered env: /Users/corneliusromer/micromamba/envs/clangdev
2024-08-21 11:54:58.653 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_16py11/bin/python
2024-08-21 11:54:58.654 [info] Discovered env: /Users/corneliusromer/micromamba/envs/smdpcli/bin/python
2024-08-21 11:54:58.655 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-ingest/bin/python
2024-08-21 11:54:58.656 [info] Discovered env: /Users/corneliusromer/micromamba/envs/sreality/bin/python
2024-08-21 11:54:58.657 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/snakemake/bin/python
2024-08-21 11:54:58.657 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake/bin/python
2024-08-21 11:54:58.658 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7py11/bin/python
2024-08-21 11:54:58.659 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_17/bin/python
2024-08-21 11:54:58.660 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-ena/bin/python
2024-08-21 11:54:58.665 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/treetime/bin/python
2024-08-21 11:54:58.668 [info] Discovered env: /Users/corneliusromer/micromamba/envs/fh/bin/python
2024-08-21 11:54:58.669 [info] Discovered env: /Users/corneliusromer/micromamba/envs/default/bin/python
2024-08-21 11:54:58.670 [info] Discovered env: /Users/corneliusromer/micromamba/envs/xopen-arm/bin/python
2024-08-21 11:54:58.671 [info] Discovered env: /opt/homebrew/bin/python3.10
2024-08-21 11:54:58.671 [info] Discovered env: /Users/corneliusromer/micromamba/envs/raxml/bin/python
2024-08-21 11:54:58.673 [info] Discovered env: /opt/homebrew/bin/python3
2024-08-21 11:54:58.674 [info] Discovered env: /opt/homebrew/bin/python3.11
2024-08-21 11:54:58.675 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/opencv/bin/python
2024-08-21 11:54:58.675 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-arm/bin/python
2024-08-21 11:54:58.680 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nbdev/bin/python
2024-08-21 11:54:58.681 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake-dev/bin/python
2024-08-21 11:54:58.683 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/r/bin/python
2024-08-21 11:54:58.687 [info] Discovered env: /Users/corneliusromer/micromamba/envs/usher
2024-08-21 11:54:58.688 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/conda
2024-08-21 11:54:58.693 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/python
2024-08-21 11:54:58.731 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/polars-book/bin/python
2024-08-21 11:54:58.748 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/conda
2024-08-21 11:54:58.748 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/python
2024-08-21 11:54:58.751 [info] Discovered manager: (Conda) /Users/corneliusromer/miniforge3/bin/conda
2024-08-21 11:54:58.752 [info] Discovered env: /Users/corneliusromer/miniforge3/bin/python
2024-08-21 11:54:58.753 [info] Discovered manager: (Conda) /Users/corneliusromer/Miniforge3/bin/conda
2024-08-21 11:54:58.753 [info] Discovered env: /Users/corneliusromer/Miniforge3/bin/python
2024-08-21 11:54:58.753 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_h_env
2024-08-21 11:54:58.756 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/augur-dev/bin/python
2024-08-21 11:54:58.757 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/smithy/bin/conda
2024-08-21 11:54:58.758 [info] Discovered env: /Users/corneliusromer/micromamba/envs/smithy/bin/python
2024-08-21 11:54:58.762 [info] Resolved /opt/homebrew/bin/python3.10
2024-08-21 11:54:58.762 [info] Resolved /opt/homebrew/bin/python3.11
2024-08-21 11:54:58.768 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pangolinUsherSampled/bin/python
2024-08-21 11:54:58.768 [info] Resolved /opt/homebrew/bin/python3
2024-08-21 11:54:58.768 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/wf-artic
2024-08-21 11:54:58.768 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur-dev/bin/python
2024-08-21 11:54:58.769 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/conda
2024-08-21 11:54:58.769 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/python
2024-08-21 11:54:58.769 [info] Discovered manager: (Conda) /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/conda
2024-08-21 11:54:58.770 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/python
2024-08-21 11:54:58.771 [info] Discovered env: /Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_/bin/python
2024-08-21 11:54:58.771 [info] Discovered env: /Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_/bin/python
2024-08-21 11:54:58.772 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/conda
2024-08-21 11:54:58.774 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/python
2024-08-21 11:54:58.774 [info] Discovered env: /Users/corneliusromer/code/mamba/build/envs/test/bin/python
2024-08-21 11:54:58.776 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextclade-sc2/bin/python
2024-08-21 11:54:58.777 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/pango3116/bin/conda
2024-08-21 11:54:58.778 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pango3116/bin/python
2024-08-21 11:54:58.779 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/snakemake-test/bin/conda
2024-08-21 11:54:58.779 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake-test/bin/python
2024-08-21 11:54:58.780 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_build_env
2024-08-21 11:54:58.783 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/pango402/bin/conda
2024-08-21 11:54:58.783 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pango402/bin/python
2024-08-21 11:54:58.784 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/vcftools-build/bin/conda
2024-08-21 11:54:58.784 [info] Discovered env: /Users/corneliusromer/micromamba/envs/vcftools-build/bin/python
2024-08-21 11:54:58.785 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/bioconda/bin/conda
2024-08-21 11:54:58.786 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda/bin/python
2024-08-21 11:54:58.786 [info] Discovered env: /Users/corneliusromer/micromamba/envs/flu_frequencies/bin/python
2024-08-21 11:54:58.786 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/conda
2024-08-21 11:54:58.787 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/python
2024-08-21 11:54:58.787 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/conda
2024-08-21 11:54:58.787 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/python
2024-08-21 11:54:58.788 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur/bin/python
2024-08-21 11:54:58.788 [info] Discovered env: /Users/corneliusromer/micromamba/envs/mpox-nextclade/bin/python
2024-08-21 11:54:58.789 [info] Discovered env: /Users/corneliusromer/micromamba/envs/basetest/bin/python
2024-08-21 11:54:58.790 [info] Discovered env: /Users/corneliusromer/micromamba/envs/flu_frequencies_test/bin/python
2024-08-21 11:54:58.799 [info] Discovered manager: (Conda) /Users/corneliusromer/code/conda-base/.dev-env/bin/conda
2024-08-21 11:54:58.799 [info] Discovered env: /Users/corneliusromer/code/conda-base/.dev-env/bin/python
2024-08-21 11:54:58.800 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-reinstall/bin/python
2024-08-21 11:54:58.804 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/conda
2024-08-21 11:54:58.804 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/python
2024-08-21 11:54:58.810 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextstrain-base/bin/python
2024-08-21 11:54:58.829 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/conda
2024-08-21 11:54:58.829 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/python
2024-08-21 11:54:58.831 [info] Locator Conda took 889.415334ms
2024-08-21 11:54:58.831 [info] Locator Homebrew took 733.111166ms
2024-08-21 11:54:58.831 [info] Locator MacCommandLineTools took 44.430167ms
2024-08-21 11:54:58.831 [info] Locator MacPythonOrg took 53.257666ms
2024-08-21 11:54:58.831 [info] Locator MacXCode took 15.667µs
2024-08-21 11:54:58.831 [info] Locator PipEnv took 33.166µs
2024-08-21 11:54:58.831 [info] Locator Poetry took 12.3265ms
2024-08-21 11:54:58.832 [info] Locator PyEnv took 438.708µs
2024-08-21 11:54:58.832 [info] Locator Venv took 7.209µs
2024-08-21 11:54:58.832 [info] Locator VirtualEnv took 10.042µs
2024-08-21 11:54:58.832 [info] Locator VirtualEnvWrapper took 11.25µs
2024-08-21 11:54:58.832 [info] Locator GlobalVirtualEnvs took 67.541875ms
2024-08-21 11:54:58.832 [info] Locator Locators took 889.610875ms
2024-08-21 11:54:58.832 [info] Locator Path took 892.056416ms
2024-08-21 11:54:58.832 [info] Locator Workspaces took 12.959µs
2024-08-21 11:54:58.832 [info] Refresh completed in 892ms
2024-08-21 11:58:15.137 [info] Starting Python Locator /Users/corneliusromer/.vscode/extensions/ms-python.python-2024.13.2024082001-darwin-arm64/python-env-tools/bin/pet server
2024-08-21 11:58:15.289 [info] Discovered manager: (Poetry) /Library/Frameworks/Python.framework/Versions/3.11/bin/poetry
2024-08-21 11:58:15.295 [error] Failed to execute Python to resolve info "/Users/corneliusromer/micromamba/envs/py12": Permission denied (os error 13)
2024-08-21 11:58:15.297 [warning] Unknown Python Env "/Users/corneliusromer/micromamba/envs/py12"
2024-08-21 11:58:15.298 [error] Failed to resolve env "/Users/corneliusromer/micromamba/envs/py12"
2024-08-21 11:58:15.300 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm64", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.340 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python
2024-08-21 11:58:15.412 [info] Discovered env: /Library/Frameworks/Python.framework/Versions/3.12/bin/python3
2024-08-21 11:58:15.413 [info] Discovered env: /Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12
2024-08-21 11:58:15.415 [info] Discovered env: /usr/local/bin/python3
2024-08-21 11:58:15.416 [info] Discovered env: /Users/corneliusromer/.virtualenvs/ena-read-docs/bin/python
2024-08-21 11:58:15.416 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py12", executable: Some("/Users/corneliusromer/micromamba/envs/py12/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.416 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/bin/conda
2024-08-21 11:58:15.416 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/bioconda-64/bin/python
2024-08-21 11:58:15.416 [info] Discovered env: /Library/Developer/CommandLineTools/usr/bin/python3
2024-08-21 11:58:15.416 [warning] Unable to find conda package Python in "/Users/corneliusromer/.pixi/envs/python", trying slower approach
2024-08-21 11:58:15.417 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py12/bin/python
2024-08-21 11:58:15.417 [info] Discovered env: /Users/corneliusromer/.local/share/virtualenvs/ncov-ingest-PlHIQus7/bin/python
2024-08-21 11:58:15.417 [error] Unable to find Conda Manager for env: CondaEnvironment { prefix: "/Users/corneliusromer/.pixi/envs/python", executable: Some("/Users/corneliusromer/.pixi/envs/python/bin/python"), version: Some("3.12.2"), conda_dir: None, arch: None }
2024-08-21 11:58:15.417 [info] Discovered env: /Users/corneliusromer/.pixi/envs/python/bin/python
2024-08-21 11:58:15.417 [info] Env ("/opt/local/bin/python3.10") in Path resolved as ResolvedPythonEnv { executable: "/opt/local/bin/python3.10", prefix: "/opt/local/Library/Frameworks/Python.framework/Versions/3.10", version: "3.10.13.final.0", is64_bit: true, symlinks: Some(["/opt/local/bin/python3.10"]) } and reported as Some(GlobalPaths)
2024-08-21 11:58:15.417 [info] Discovered env: /opt/local/bin/python3.10
2024-08-21 11:58:15.417 [info] Env ("/opt/local/bin/python3.11") in Path resolved as ResolvedPythonEnv { executable: "/opt/local/bin/python3.11", prefix: "/opt/local/Library/Frameworks/Python.framework/Versions/3.11", version: "3.11.7.final.0", is64_bit: true, symlinks: Some(["/opt/local/bin/python3.11"]) } and reported as Some(GlobalPaths)
2024-08-21 11:58:15.417 [info] Resolved Python Environment /opt/homebrew/Caskroom/miniforge/base/bin/python
2024-08-21 11:58:15.428 [info] Discovered env: /opt/local/bin/python3.11
2024-08-21 11:58:15.429 [info] Discovered env: /usr/local/bin/python3.12
2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/Miniforge3/conda-bld/simplejson_1719492293018/_build_env", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-test", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/build-raxml", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_build_env", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.430 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_h_env", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree-cmaple", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/clangdev", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/gofasta", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/hyphy-x86", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/ldc", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/auspice", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextclade", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm64", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm64/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/cmaple", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/email-validator", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_", executable: Some("/Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_/bin/python"), version: Some("3.8.15"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/khipu", executable: Some("/Users/corneliusromer/micromamba/envs/khipu/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur-dev-arm", executable: Some("/Users/corneliusromer/micromamba/envs/augur-dev-arm/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_", executable: Some("/Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_/bin/python"), version: Some("3.8.15"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-test
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/poseidon", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/trimadap", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/basetest", executable: Some("/Users/corneliusromer/micromamba/envs/basetest/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur-dev", executable: Some("/Users/corneliusromer/micromamba/envs/augur-dev/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-submission", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-submission/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/lr_quant_benchmark", executable: Some("/Users/corneliusromer/micromamba/envs/lr_quant_benchmark/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/bioconda-arm", executable: Some("/Users/corneliusromer/micromamba/envs/bioconda-arm/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py12", executable: Some("/Users/corneliusromer/micromamba/envs/py12/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-ena", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-ena/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.431 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/osxtest", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/mamba", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/code/mamba/build/envs/test", executable: Some("/Users/corneliusromer/code/mamba/build/envs/test/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/usher", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/matchspec", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/iqtree-native", executable: Some("/Users/corneliusromer/micromamba/envs/iqtree-native/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pypy-arm", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/zstdtest", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/throwaway", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-ingest", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-ingest/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree-cmaple
2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/gofasta
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/tsv-utils", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/cdk8s", executable: Some("/Users/corneliusromer/micromamba/envs/cdk8s/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/test", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/tsv-utils-bioconda", executable: None, version: None, conda_dir: None, arch: None }
2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/matchspec
2024-08-21 11:58:15.432 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/fhdev", executable: Some("/Users/corneliusromer/micromamba/envs/fhdev/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/cmaple
2024-08-21 11:58:15.432 [info] Discovered env: /Users/corneliusromer/micromamba/envs/poseidon
2024-08-21 11:58:15.433 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_h_env
2024-08-21 11:58:15.434 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/lapis-silo", executable: Some("/Users/corneliusromer/micromamba/envs/lapis-silo/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.434 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree
2024-08-21 11:58:15.434 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/fh", executable: Some("/Users/corneliusromer/micromamba/envs/fh/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/codespell", executable: Some("/Users/corneliusromer/micromamba/envs/codespell/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nwkfmtdev", executable: Some("/Users/corneliusromer/micromamba/envs/nwkfmtdev/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nbdevcf", executable: Some("/Users/corneliusromer/micromamba/envs/nbdevcf/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/treetime", executable: Some("/Users/corneliusromer/micromamba/envs/treetime/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/biopython", executable: Some("/Users/corneliusromer/micromamba/envs/biopython/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextclade-sc2", executable: Some("/Users/corneliusromer/micromamba/envs/nextclade-sc2/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7_32", executable: Some("/Users/corneliusromer/micromamba/envs/s7_32/bin/python"), version: Some("3.9.19"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/sdow-backend", executable: Some("/Users/corneliusromer/micromamba/envs/sdow-backend/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_10py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_10py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/mpox-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/mpox-nextclade/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/augur", executable: Some("/Users/corneliusromer/micromamba/envs/augur/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py39-test", executable: Some("/Users/corneliusromer/micromamba/envs/py39-test/bin/python"), version: Some("3.9.19"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/related-issues", executable: Some("/Users/corneliusromer/micromamba/envs/related-issues/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/grayskull", executable: Some("/Users/corneliusromer/micromamba/envs/grayskull/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/hyphy", executable: Some("/Users/corneliusromer/micromamba/envs/hyphy/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nbdev", executable: Some("/Users/corneliusromer/micromamba/envs/nbdev/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/flu_frequencies", executable: Some("/Users/corneliusromer/micromamba/envs/flu_frequencies/bin/python"), version: Some("3.10.12"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/xopen", executable: Some("/Users/corneliusromer/micromamba/envs/xopen/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/otd", executable: Some("/Users/corneliusromer/micromamba/envs/otd/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/loculus-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/loculus-nextclade/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.435 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-submission/bin/python
2024-08-21 11:58:15.435 [info] Discovered env: /Users/corneliusromer/micromamba/envs/throwaway
2024-08-21 11:58:15.435 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pl019", executable: Some("/Users/corneliusromer/micromamba/envs/pl019/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/email-validator
2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextclade
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_10", executable: Some("/Users/corneliusromer/micromamba/envs/s8_10/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_16", executable: Some("/Users/corneliusromer/micromamba/envs/s8_16/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pathoplexus-nextclade", executable: Some("/Users/corneliusromer/micromamba/envs/pathoplexus-nextclade/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_1py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_1py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/pc", executable: Some("/Users/corneliusromer/micromamba/envs/pc/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/miniwdl", executable: Some("/Users/corneliusromer/micromamba/envs/miniwdl/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nbdevcf/bin/python
2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7_32/bin/python
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/test1", executable: Some("/Users/corneliusromer/micromamba/envs/test1/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/flu_frequencies_test", executable: Some("/Users/corneliusromer/micromamba/envs/flu_frequencies_test/bin/python"), version: Some("3.10.12"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nwkfmtdev/bin/python
2024-08-21 11:58:15.436 [info] Discovered env: /Users/corneliusromer/Miniforge3/conda-bld/simplejson_1719492293018/_build_env
2024-08-21 11:58:15.437 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_18py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_18py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/ldc
2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/tsv-utils
2024-08-21 11:58:15.437 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/sreality", executable: Some("/Users/corneliusromer/micromamba/envs/sreality/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/osxtest
2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/xopen/bin/python
2024-08-21 11:58:15.437 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pc/bin/python
2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/fhdev/bin/python
2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/zstdtest
2024-08-21 11:58:15.438 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/xopen-arm", executable: Some("/Users/corneliusromer/micromamba/envs/xopen-arm/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.438 [info] Discovered manager: (Conda) /Users/corneliusromer/code/conda-base/.dev-env/bin/conda
2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/code/conda-base/.dev-env/bin/python
2024-08-21 11:58:15.438 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/default", executable: Some("/Users/corneliusromer/micromamba/envs/default/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/usher
2024-08-21 11:58:15.438 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/matchspec
2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/basetest/bin/python
2024-08-21 11:58:15.438 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy-arm
2024-08-21 11:58:15.438 [info] Discovered env: /Users/corneliusromer/micromamba/envs/sreality/bin/python
2024-08-21 11:58:15.438 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy=7.3.11
2024-08-21 11:58:15.439 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_18py11/bin/python
2024-08-21 11:58:15.439 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7_3_2", executable: Some("/Users/corneliusromer/micromamba/envs/s7_3_2/bin/python"), version: Some("3.10.14"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.439 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_16py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_16py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_17", executable: Some("/Users/corneliusromer/micromamba/envs/s8_17/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [info] Discovered env: /Users/corneliusromer/micromamba/envs/clangdev
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/polars", executable: Some("/Users/corneliusromer/micromamba/envs/polars/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/smdpcli", executable: Some("/Users/corneliusromer/micromamba/envs/smdpcli/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/nextstrain-base", executable: Some("/Users/corneliusromer/micromamba/envs/nextstrain-base/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_10/bin/python
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_18", executable: Some("/Users/corneliusromer/micromamba/envs/s8_18/bin/python"), version: Some("3.12.5"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/testenv
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/snakemake-dev", executable: Some("/Users/corneliusromer/micromamba/envs/snakemake-dev/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py36-64", executable: Some("/Users/corneliusromer/micromamba/envs/py36-64/bin/python"), version: Some("3.6.15"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.440 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/py38-test", executable: Some("/Users/corneliusromer/micromamba/envs/py38-test/bin/python"), version: Some("3.8.19"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s8_13py11", executable: Some("/Users/corneliusromer/micromamba/envs/s8_13py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/obecni", executable: Some("/Users/corneliusromer/micromamba/envs/obecni/bin/python"), version: Some("3.12.4"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.441 [info] Discovered env: /opt/homebrew/bin/python3
2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/snakemake", executable: Some("/Users/corneliusromer/micromamba/envs/snakemake/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/s7py11", executable: Some("/Users/corneliusromer/micromamba/envs/s7py11/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.441 [error] Unable to find Conda Manager for the Conda env: CondaEnvironment { prefix: "/Users/corneliusromer/micromamba/envs/raxml", executable: Some("/Users/corneliusromer/micromamba/envs/raxml/bin/python"), version: Some("3.11.9"), conda_dir: None, arch: Some(X64) }
2024-08-21 11:58:15.441 [info] Discovered manager: (Conda) /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/conda
2024-08-21 11:58:15.441 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/bin/python
2024-08-21 11:58:15.441 [info] Discovered env: /Users/corneliusromer/micromamba/envs/otd/bin/python
2024-08-21 11:58:15.441 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/auspice
2024-08-21 11:58:15.441 [info] Discovered env: /Users/corneliusromer/micromamba/envs/build-raxml
2024-08-21 11:58:15.441 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/smithy/bin/conda
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/smithy/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/hyphy-x86
2024-08-21 11:58:15.442 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/grayskullenv/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/grayskull/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/mamba
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/test
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py36-64/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-ingest/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/lr_quant_benchmark/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/conda-base
2024-08-21 11:58:15.442 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/augur-dev/bin/python
2024-08-21 11:58:15.442 [info] Discovered env: /Users/corneliusromer/micromamba/envs/auspice
2024-08-21 11:58:15.442 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/polars-book/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/obecni/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nbdev/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-nextclade/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextstrain-base/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/loculus-ena/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/related-issues/bin/python
2024-08-21 11:58:15.443 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/snakemake-test/bin/conda
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake-test/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/khipu/bin/python
2024-08-21 11:58:15.443 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_1py11/bin/python
2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/hyphy/bin/python
2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/fh/bin/python
2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/miniwdl/bin/python
2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/lapis-silo/bin/python
2024-08-21 11:58:15.444 [info] Discovered env: /Users/corneliusromer/micromamba/envs/nextclade-sc2/bin/python
2024-08-21 11:58:15.445 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur-dev/bin/python
2024-08-21 11:58:15.445 [info] Discovered env: /Users/corneliusromer/micromamba/envs/iqtree-native/bin/python
2024-08-21 11:58:15.445 [info] Discovered env: /Users/corneliusromer/micromamba/envs/biopython/bin/python
2024-08-21 11:58:15.445 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-arm/bin/python
2024-08-21 11:58:15.445 [info] Discovered env: /usr/bin/python3
2024-08-21 11:58:15.445 [info] Discovered env: /opt/homebrew/bin/python3.10
2024-08-21 11:58:15.445 [info] Discovered env: /opt/homebrew/bin/python3.11
2024-08-21 11:58:15.446 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pathoplexus-nextclade/bin/python
2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/treetime/bin/python
2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py39-test/bin/python
2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_10py11/bin/python
2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/codespell/bin/python
2024-08-21 11:58:15.447 [info] Discovered env: /Users/corneliusromer/micromamba/envs/trimadap
2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/micromamba/envs/sdow-backend/bin/python
2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/code/ncov/.snakemake/conda/07c1d165d433e95e46312a0a1caaede5_/bin/python
2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pypy-arm
2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/micromamba/envs/cdk8s/bin/python
2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/micromamba/envs/mpox-nextclade/bin/python
2024-08-21 11:58:15.448 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/auspice-dev
2024-08-21 11:58:15.448 [info] Discovered env: /Users/corneliusromer/code/mamba/build/envs/test/bin/python
2024-08-21 11:58:15.449 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/snakefmt/bin/python
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/xopen-arm/bin/python
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pl019/bin/python
2024-08-21 11:58:15.450 [info] Discovered manager: (Conda) /Users/corneliusromer/Miniforge3/bin/conda
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/Miniforge3/bin/python
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/default/bin/python
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/smdpcli/bin/python
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_17/bin/python
2024-08-21 11:58:15.450 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/conda
2024-08-21 11:58:15.450 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/py11/bin/python
2024-08-21 11:58:15.450 [info] Discovered env: /Users/corneliusromer/micromamba/envs/flu_frequencies/bin/python
2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_16py11/bin/python
2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7_3_2/bin/python
2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/polars/bin/python
2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur-dev-arm/bin/python
2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/code/tsv-utils-feedstock/miniforge3/conda-bld/debug_1719963245734/_build_env
2024-08-21 11:58:15.451 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/aliasor/bin/python
2024-08-21 11:58:15.451 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_18/bin/python
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/augur/bin/python
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake/bin/python
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/snakemake-dev/bin/python
2024-08-21 11:58:15.452 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/conda
2024-08-21 11:58:15.452 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pangolin/bin/python
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/py38-test/bin/python
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/raxml/bin/python
2024-08-21 11:58:15.452 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/pango3116/bin/conda
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pango3116/bin/python
2024-08-21 11:58:15.452 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s7py11/bin/python
2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_13py11/bin/python
2024-08-21 11:58:15.453 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/bioconda/bin/conda
2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda/bin/python
2024-08-21 11:58:15.453 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/conda
2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/bioconda-utils/bin/python
2024-08-21 11:58:15.453 [info] Discovered manager: (Conda) /Users/corneliusromer/miniforge3/bin/conda
2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/miniforge3/bin/python
2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/flu_frequencies_test/bin/python
2024-08-21 11:58:15.453 [info] Discovered env: /Users/corneliusromer/micromamba/envs/test1/bin/python
2024-08-21 11:58:15.454 [info] Discovered env: /Users/corneliusromer/micromamba/envs/s8_16/bin/python
2024-08-21 11:58:15.454 [info] Discovered env: /Users/corneliusromer/code/ncov/.snakemake/conda/1eb5c34cec2847056d159ebb3ba309a0_/bin/python
2024-08-21 11:58:15.454 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/conda
2024-08-21 11:58:15.454 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/general/bin/python
2024-08-21 11:58:15.454 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/conda
2024-08-21 11:58:15.454 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/mamba-dev/bin/python
2024-08-21 11:58:15.454 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/vcftools-build/bin/conda
2024-08-21 11:58:15.455 [info] Discovered env: /Users/corneliusromer/micromamba/envs/vcftools-build/bin/python
2024-08-21 11:58:15.456 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/wf-artic
2024-08-21 11:58:15.457 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/conda
2024-08-21 11:58:15.458 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-base/bin/python
2024-08-21 11:58:15.458 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/taxonium/bin/python
2024-08-21 11:58:15.458 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/snakemake/bin/python
2024-08-21 11:58:15.458 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/treetime/bin/python
2024-08-21 11:58:15.458 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/conda
2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/mambabug/bin/python
2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pypy/bin/python
2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/managed-conda/bin/python
2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/treetime9/bin/python
2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pangolinUsherSampled/bin/python
2024-08-21 11:58:15.459 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/pyfastx/bin/python
2024-08-21 11:58:15.460 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/opencv/bin/python
2024-08-21 11:58:15.460 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/r/bin/python
2024-08-21 11:58:15.460 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain-reinstall/bin/python
2024-08-21 11:58:15.461 [info] Discovered env: /Users/corneliusromer/micromamba/envs/tsv-utils-bioconda
2024-08-21 11:58:15.461 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/conda
2024-08-21 11:58:15.462 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/nextstrain/bin/python
2024-08-21 11:58:15.462 [info] Discovered manager: (Conda) /Users/corneliusromer/micromamba/envs/pango402/bin/conda
2024-08-21 11:58:15.462 [info] Discovered env: /Users/corneliusromer/micromamba/envs/pango402/bin/python
2024-08-21 11:58:15.462 [info] Discovered manager: (Conda) /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/conda
2024-08-21 11:58:15.462 [info] Discovered env: /opt/homebrew/Caskroom/miniforge/base/envs/py11-64/bin/python
2024-08-21 11:58:15.462 [info] Locator Conda took 274.565416ms
2024-08-21 11:58:15.462 [info] Locator Homebrew took 192.286375ms
2024-08-21 11:58:15.462 [info] Locator MacCommandLineTools took 44.558542ms
2024-08-21 11:58:15.462 [info] Locator MacPythonOrg took 32.52675ms
2024-08-21 11:58:15.463 [info] Locator MacXCode took 10.124625ms
2024-08-21 11:58:15.463 [info] Locator PipEnv took 6.291µs
2024-08-21 11:58:15.463 [info] Locator Poetry took 8.090917ms
2024-08-21 11:58:15.463 [info] Locator PyEnv took 8.423208ms
2024-08-21 11:58:15.463 [info] Locator Venv took 8.054166ms
2024-08-21 11:58:15.463 [info] Locator VirtualEnv took 10.176041ms
2024-08-21 11:58:15.463 [info] Locator VirtualEnvWrapper took 7.774708ms
2024-08-21 11:58:15.463 [info] Locator GlobalVirtualEnvs took 57.434875ms
2024-08-21 11:58:15.463 [info] Locator Locators took 274.743ms
2024-08-21 11:58:15.463 [info] Locator Path took 275.254459ms
2024-08-21 11:58:15.463 [info] Locator Workspaces took 22.701958ms
2024-08-21 11:58:15.463 [info] Refresh completed in 275ms
2024-08-21 11:58:15.463 [info] Resolved /Library/Frameworks/Python.framework/Versions/3.12/bin/python3
2024-08-21 11:58:15.463 [info] Resolved /Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12
2024-08-21 11:58:15.463 [info] Resolved /opt/homebrew/bin/python3
2024-08-21 11:58:15.469 [info] Resolved /opt/homebrew/bin/python3.11
2024-08-21 11:58:15.469 [info] Resolved /opt/homebrew/bin/python3.10

@github-actions github-actions bot added the triage-needed Needs assignment to the proper sub-team label Aug 21, 2024
This was referenced Aug 21, 2024
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@DonJayamanne
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Sorry you are still running into issues
Please can you leave the setting to js, then set the log level to ‘Trace’ via ‘Developer : Set log level’
Then select the command, ‘Python: clear cache and reload window’

Next open a python file and open a terminal
Finally after everything stabilises (10-15s), please copy the python logs and upload here

@DonJayamanne DonJayamanne mentioned this issue Aug 21, 2024
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@DonJayamanne
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And thank you very much for the detailed logs and your patience

@DonJayamanne DonJayamanne self-assigned this Aug 21, 2024
@DonJayamanne DonJayamanne added bug Issue identified by VS Code Team member as probable bug regression Bug didn't exist in a previous release experimenting Feature is part of an experiment area-native-locator Issues with Rust based python locator labels Aug 21, 2024
@DonJayamanne DonJayamanne mentioned this issue Aug 21, 2024
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DonJayamanne added a commit to microsoft/python-environment-tools that referenced this issue Aug 21, 2024
@DonJayamanne
Resolve with paths not just exe (#140)
12f5cb1 
For microsoft/vscode-python#23982
DonJayamanne added a commit that referenced this issue Aug 21, 2024
@DonJayamanne
Handle poetry env manager from native locator (#23983)
8ea21a9 
For #23982
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DonJayamanne commented Aug 21, 2024 •
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@corneliusroemer
A new pre-release version of the Python extension has been published with some fixes (i think I've managed to fix it),
please can you try that new version and share the logs again (please share logs both with js and native, please ensure to re-load vscode when changing that setting)

@DonJayamanne DonJayamanne added the info-needed Issue requires more information from poster label Aug 21, 2024
@karthiknadig karthiknadig mentioned this issue Aug 22, 2024
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@anthonykim1
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@corneliusroemer Can you still repro the problem?

@corneliusroemer
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Thanks for the ping @anthonykim1 and @DonJayamanne - yes indeed, the problem appears fixed using native locator in latest pre-release v2024.13.2024082601 (pre-release)

@github-actions github-actions bot removed the info-needed Issue requires more information from poster label Aug 27, 2024
@DonJayamanne DonJayamanne added the verified Verification succeeded label Aug 27, 2024
@anthonykim1 anthonykim1 mentioned this issue Sep 3, 2024
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anthonykim1 pushed a commit to anthonykim1/vscode-python that referenced this issue Sep 13, 2024
@DonJayamanne @anthonykim1
Handle poetry env manager from native locator (microsoft#23983)
06ef77e 
For microsoft#23982
@agonzaleziniguez
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In my case, this is still an issue. The python extension only loads when Python Locator is set to "js". When using "native" the extension never loads.

@anthonykim1
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@agonzaleziniguez What is your Python extension version?

@github-actions github-actions bot added the info-needed Issue requires more information from poster label Sep 23, 2024
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agonzaleziniguez commented Sep 23, 2024 via email

@github-actions github-actions bot removed the info-needed Issue requires more information from poster label Sep 23, 2024
@corneliusroemer corneliusroemer mentioned this issue Sep 30, 2024
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