MToolBox-human-haplogroup-prediction

#!/usr/bin/env bash
#
# snakemake -s ~/theCellarDoor/MToolBox_dev/heterobasidion_mt/Snakefile --reason \
# --printshellcmds \
# --keep-going \
# --cores 100 \
# --cluster-config cluster.yaml --latency-wait 60 \
# --cluster 'sbatch -A snic2018-8-310 -p core -n {cluster.threads} -t 7:00:00 -o {cluster.stdout}' \
# --dryrun

DIR="$(dirname "$(readlink -f "$0")")"
snakefile=${DIR}/snakefiles/haplogroup_assignment.snakefile
git_show=${DIR}/scripts/git_show.sh

# do you want the DAG?
args=$(echo $@ | tr '[:upper:]' '[:lower:]')

if [[ $args == *"dag"* ]]; then
    snakemake --dag -s ${snakefile} | dot -Tsvg
else
    bash ${git_show}
    snakemake -s ${snakefile} "$@"
fi