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This repository has been archived by the owner on Apr 8, 2021. It is now read-only.

mjsteinbaugh / mair-atf6-rnaseq-celegans Public archive

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mair-atf6-rnaseq-celegans

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prepare_bcbio.sh

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9 lines (7 loc) · 174 Bytes

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mair-atf6-rnaseq-celegans

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prepare_bcbio.sh

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9 lines (7 loc) · 174 Bytes

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bcbio_nextgen.py -w template bcbio.yaml bcbio.csv data-raw/fastq/*.fastq.gz

cd bcbio/work

cp ../../submit_bcbio.sh .

sbatch submit_bcbio.sh

squeue -u $USER

less *.err

tree

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