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As part of the data pre-cleaning, need to remove any HPO terms from consideration that are not a descendant of phenotypic abnormality (inheritance, blood types, etc).
Steps:
Can either parse HPO directly from the Monarch KG or alternatively could download the latest version of HPO.json file, the latter of which might be preferred.
Generate the HPO graph and a list of descendants of phenotypic abnormality using NetworkX.
Filter HPO terms from considered phenotypes that are not within that list of descendants.
The text was updated successfully, but these errors were encountered:
As part of the data pre-cleaning, need to remove any HPO terms from consideration that are not a descendant of phenotypic abnormality (inheritance, blood types, etc).
Steps:
The text was updated successfully, but these errors were encountered: