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.gitlab-ci.yml
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# To use the Docker Hub docker image
# image: docker:latest
image: $CI_REGISTRY/mouse-informatics/docker:latest
variables:
# When using dind service we need to instruct docker, to talk with the
# daemon started inside of the service. The daemon is available with
# a network connection instead of the default /var/run/docker.sock socket.
#
# The 'docker' hostname is the alias of the service container as described at
# https://docs.gitlab.com/ee/ci/docker/using_docker_images.html#accessing-the-services
#
# Note that if you're using the Kubernetes executor, the variable should be set to
# tcp://localhost:2375/ because of how the Kubernetes executor connects services
# to the job container
# DOCKER_HOST: tcp://localhost:2375/
#
# For non-Kubernetes executors, we use tcp://docker:2375/
DOCKER_HOST: tcp://docker:2375/
# When using dind, it's wise to use the overlayfs driver for
# improved performance.
DOCKER_DRIVER: overlay2
# Since the docker:dind container and the runner container don’t share their root
# filesystem, the job’s working directory can be used as a mount point for children
# containers. For example, if you have files you want to share with a child container,
# you may create a subdirectory under /builds/$CI_PROJECT_PATH and use it as your
# mount point.
MOUNT_POINT: /builds/$CI_PROJECT_PATH/mnt
# For EBI you need to override the definition of CI_REGISTRY to remove the port number
CI_REGISTRY: dockerhub.ebi.ac.uk
CI_REGISTRY_IMAGE: $CI_REGISTRY/$CI_PROJECT_PATH
#NOW: $(date '+%Y-%m-%d-%H-%M-%S')
#NOW: $(date '+%Y-%m-%d')
# To solve the issue with the Docker in Docker 19.03 service.
# Logged as: GitLab.com CI jobs failing if using docker:stable-dind image
# see: https://gitlab.com/gitlab-com/gl-infra/production/issues/982
DOCKER_TLS_CERTDIR: ""
stages:
# - env
- build
- production-deploy
- sandbox-deploy
- dev-deploy
- test-deploy
# env:
# stage: env
# script:
# - export
build_image:
stage: build
services:
- name: $CI_REGISTRY/mouse-informatics/dind:latest
alias: docker
except:
- schedules
- triggers
- pipelines
script:
# - docker info
- mkdir -p "$MOUNT_POINT"
- echo "${CI_REGISTRY_PASSWORD}" | docker login -u "${CI_REGISTRY_USER}" --password-stdin ${CI_REGISTRY}
- cd impc_prod_tracker
- sed -i "s|maven|${LOCAL_GITLAB_MAVEN_IMAGE}|g" Dockerfile
- sed -i "s|FROM amazoncorretto|FROM ${LOCAL_GITLAB_CORRETTO_IMAGE}|g" Dockerfile
- docker build -t "${CI_REGISTRY_IMAGE}":"${CI_COMMIT_SHA:0:12}" -t "${CI_REGISTRY_IMAGE}":latest . | tee ${MOUNT_POINT}/build.log
- docker push "${CI_REGISTRY_IMAGE}":"${CI_COMMIT_SHA:0:12}" | tee ${MOUNT_POINT}/push.log
- docker push "${CI_REGISTRY_IMAGE}":latest | tee ${MOUNT_POINT}/push.log
- docker logout ${CI_REGISTRY}
- |
if [[ "${DOCKER_HUB_PUSH}" == "true" ]]; then
echo "${DOCKER_HUB_PSWD}" | docker login -u "${DOCKER_HUB_USER}" --password-stdin
docker tag "${CI_REGISTRY_IMAGE}":"${CI_COMMIT_SHA:0:12}" "${DOCKER_HUB_USER}"/"${DOCKER_HUB_REPO}":"${CI_COMMIT_SHA:0:12}"
docker tag "${CI_REGISTRY_IMAGE}":"${CI_COMMIT_SHA:0:12}" "${DOCKER_HUB_USER}"/"${DOCKER_HUB_REPO}":latest
docker push "${DOCKER_HUB_USER}"/"${DOCKER_HUB_REPO}":"${CI_COMMIT_SHA:0:12}" | tee ${MOUNT_POINT}/dockerhub-push-latest.log
docker push "${DOCKER_HUB_USER}"/"${DOCKER_HUB_REPO}":latest | tee ${MOUNT_POINT}/dockerhub-push-latest.log
docker logout
fi
artifacts:
paths:
- "$MOUNT_POINT/"
# build_jars:
# stage: build
# image: maven:3.6.3-jdk-11
# script:
# - 'mvn -f impc_prod_tracker/pom.xml -s .gitlab-ci_settings.xml clean deploy'
# only:
# - master
# except:
# - schedules
# - triggers
# - pipelines
hh-production:
stage: production-deploy
image: $CI_REGISTRY/mouse-informatics/helm-kubectl-alpine:latest
rules:
- if: '$PRODUCTION_DEPLOYMENT == "true" && $CI_PIPELINE_SOURCE == "schedule"'
script:
# Only deploy from the MPI2 impc-production-tracker repository rather than repository forks
- |
if [ ! -z ${HH_KUBERNETES_ENDPOINT+set} ]; then
kubectl config set-cluster local --server="${HH_KUBERNETES_ENDPOINT}"
kubectl config set clusters.local.certificate-authority-data "${HH_KUBERNETES_CERTIFICATE_AUTHORITY_DATA}"
kubectl config set-credentials ${HH_KUBERNETES_USER} --token="${HH_KUBERNETES_USER_TOKEN}"
kubectl config set-context "${HH_KUBERNETES_NAMESPACE}" --cluster=local --user=${HH_KUBERNETES_USER} --namespace="${HH_KUBERNETES_NAMESPACE}"
kubectl config use-context "${HH_KUBERNETES_NAMESPACE}"
kubectl version
cd impc_prod_tracker
#
#
# Substitute the "latest" image tag in your deployment template with a more specific tag
# and record the deployment so you can rollback to this particular version.
#
sed -i "s/impc-production-tracker-mirror:latest/impc-production-tracker-mirror:${PRODUCTION_API_TAG}/g" kube/wp/production/api-service/api-service-deployment.yaml
sed -i "s/STRING_REPLACED_DURING_REDEPLOY/$(date)/g" kube/wp/production/api-service/api-service-deployment.yaml
if kubectl apply -f kube/wp/production/api-service/api-service-deployment.yaml --record | grep -q unchanged; then
echo "=> Patching deployment to force image update."
kubectl patch -f kube/wp/production/api-service/api-service-deployment.yaml --record -p "{\"spec\":{\"template\":{\"metadata\":{\"annotations\":{\"ci-last-updated\":\"$(date +'%s')\"}}}}}"
else
echo "=> Deployment apply has changed the object, no need to force image update."
fi
#
#
# Log the status of the application deployment
#
kubectl rollout status -f kube/wp/production/api-service/api-service-deployment.yaml
kubectl get pod,deployment,rs,svc,ing
fi
hx-production:
stage: production-deploy
image: $CI_REGISTRY/mouse-informatics/helm-kubectl-alpine:latest
rules:
- if: '$PRODUCTION_DEPLOYMENT == "true" && $CI_PIPELINE_SOURCE == "schedule"'
script:
# Only deploy from the MPI2 impc-production-tracker repository rather than repository forks
- |
if [ ! -z ${HX_KUBERNETES_ENDPOINT+set} ]; then
kubectl config set-cluster local --server="${HX_KUBERNETES_ENDPOINT}"
kubectl config set clusters.local.certificate-authority-data "${HX_KUBERNETES_CERTIFICATE_AUTHORITY_DATA}"
kubectl config set-credentials ${HX_KUBERNETES_USER} --token="${HX_KUBERNETES_USER_TOKEN}"
kubectl config set-context "${HX_KUBERNETES_NAMESPACE}" --cluster=local --user=${HX_KUBERNETES_USER} --namespace="${HX_KUBERNETES_NAMESPACE}"
kubectl config use-context "${HX_KUBERNETES_NAMESPACE}"
kubectl version
cd impc_prod_tracker
#
#
# Substitute the "latest" image tag in your deployment template with a more specific tag
# and record the deployment so you can rollback to this particular version.
#
sed -i "s/impc-production-tracker-mirror:latest/impc-production-tracker-mirror:${PRODUCTION_API_TAG}/g" kube/wp/production/api-service/api-service-deployment.yaml
sed -i "s/STRING_REPLACED_DURING_REDEPLOY/$(date)/g" kube/wp/production/api-service/api-service-deployment.yaml
sed -i "s/HL_PROXY/HX_PROXY/g" kube/wp/production/api-service/api-service-deployment.yaml
if kubectl apply -f kube/wp/production/api-service/api-service-deployment.yaml --record | grep -q unchanged; then
echo "=> Patching deployment to force image update."
kubectl patch -f kube/wp/production/api-service/api-service-deployment.yaml --record -p "{\"spec\":{\"template\":{\"metadata\":{\"annotations\":{\"ci-last-updated\":\"$(date +'%s')\"}}}}}"
else
echo "=> Deployment apply has changed the object, no need to force image update."
fi
#
#
# Log the status of the application deployment
#
kubectl rollout status -f kube/wp/production/api-service/api-service-deployment.yaml
kubectl get pod,deployment,rs,svc,ing
fi
hh-sandbox:
stage: sandbox-deploy
image: $CI_REGISTRY/mouse-informatics/helm-kubectl-alpine:latest
rules:
- if: '$PRODUCTION_DEPLOYMENT != "true" && $CI_PROJECT_NAMESPACE == "mouse-informatics" && $CI_COMMIT_REF_NAME == "master" && $CI_PIPELINE_SOURCE == "schedule"'
when: on_success
- if: '$PRODUCTION_DEPLOYMENT != "true" && $CI_PROJECT_NAMESPACE == "mouse-informatics" && $CI_COMMIT_REF_NAME == "master" && $CI_PIPELINE_SOURCE == "pipeline"'
when: on_success
script:
# Only deploy from the MPI2 impc-production-tracker repository rather than repository forks
- |
if [ ! -z ${HH_KUBERNETES_ENDPOINT+set} ]; then
kubectl config set-cluster local --server="${HH_KUBERNETES_ENDPOINT}"
kubectl config set clusters.local.certificate-authority-data "${HH_KUBERNETES_CERTIFICATE_AUTHORITY_DATA}"
kubectl config set-credentials ${HH_KUBERNETES_SANDBOX_USER} --token="${HH_KUBERNETES_SANDBOX_USER_TOKEN}"
kubectl config set-context "${HH_KUBERNETES_SANDBOX_NAMESPACE}" --cluster=local --user=${HH_KUBERNETES_SANDBOX_USER} --namespace="${HH_KUBERNETES_SANDBOX_NAMESPACE}"
kubectl config use-context "${HH_KUBERNETES_SANDBOX_NAMESPACE}"
kubectl version
cd impc_prod_tracker
#
#
# Substitute the "latest" image tag in your deployment template with a more specific tag
# and record the deployment so you can rollback to this particular version.
#
sed -i "s/impc-production-tracker-mirror:latest/impc-production-tracker-mirror:${SANDBOX_API_TAG}/g" kube/wp/sandbox/api-service/api-service-deployment.yaml
sed -i "s/STRING_REPLACED_DURING_REDEPLOY/$(date)/g" kube/wp/sandbox/api-service/api-service-deployment.yaml
if kubectl apply -f kube/wp/sandbox/api-service/api-service-deployment.yaml --record | grep -q unchanged; then
echo "=> Patching deployment to force image update."
kubectl patch -f kube/wp/sandbox/api-service/api-service-deployment.yaml --record -p "{\"spec\":{\"template\":{\"metadata\":{\"annotations\":{\"ci-last-updated\":\"$(date +'%s')\"}}}}}"
else
echo "=> Deployment apply has changed the object, no need to force image update."
fi
#
#
# Log the status of the application deployment
#
kubectl rollout status -f kube/wp/sandbox/api-service/api-service-deployment.yaml
kubectl get pod,deployment,rs,svc,ing
fi
hx-sandbox:
stage: sandbox-deploy
image: $CI_REGISTRY/mouse-informatics/helm-kubectl-alpine:latest
rules:
- if: '$PRODUCTION_DEPLOYMENT != "true" && $CI_PROJECT_NAMESPACE == "mouse-informatics" && $CI_COMMIT_REF_NAME == "master" && $CI_PIPELINE_SOURCE == "schedule"'
when: on_success
- if: '$PRODUCTION_DEPLOYMENT != "true" && $CI_PROJECT_NAMESPACE == "mouse-informatics" && $CI_COMMIT_REF_NAME == "master" && $CI_PIPELINE_SOURCE == "pipeline"'
when: on_success
script:
# Only deploy from the MPI2 impc-production-tracker repository rather than repository forks
- |
if [ ! -z ${HX_KUBERNETES_ENDPOINT+set} ]; then
kubectl config set-cluster local --server="${HX_KUBERNETES_ENDPOINT}"
kubectl config set clusters.local.certificate-authority-data "${HX_KUBERNETES_CERTIFICATE_AUTHORITY_DATA}"
kubectl config set-credentials ${HX_KUBERNETES_SANDBOX_USER} --token="${HX_KUBERNETES_SANDBOX_USER_TOKEN}"
kubectl config set-context "${HX_KUBERNETES_SANDBOX_NAMESPACE}" --cluster=local --user=${HX_KUBERNETES_SANDBOX_USER} --namespace="${HX_KUBERNETES_SANDBOX_NAMESPACE}"
kubectl config use-context "${HX_KUBERNETES_SANDBOX_NAMESPACE}"
kubectl version
cd impc_prod_tracker
#
#
# Substitute the "latest" image tag in your deployment template with a more specific tag
# and record the deployment so you can rollback to this particular version.
#
sed -i "s/impc-production-tracker-mirror:latest/impc-production-tracker-mirror:${SANDBOX_API_TAG}/g" kube/wp/sandbox/api-service/api-service-deployment.yaml
sed -i "s/STRING_REPLACED_DURING_REDEPLOY/$(date)/g" kube/wp/sandbox/api-service/api-service-deployment.yaml
sed -i "s/HL_PROXY/HX_PROXY/g" kube/wp/sandbox/api-service/api-service-deployment.yaml
if kubectl apply -f kube/wp/sandbox/api-service/api-service-deployment.yaml --record | grep -q unchanged; then
echo "=> Patching deployment to force image update."
kubectl patch -f kube/wp/sandbox/api-service/api-service-deployment.yaml --record -p "{\"spec\":{\"template\":{\"metadata\":{\"annotations\":{\"ci-last-updated\":\"$(date +'%s')\"}}}}}"
else
echo "=> Deployment apply has changed the object, no need to force image update."
fi
#
#
# Log the status of the application deployment
#
kubectl rollout status -f kube/wp/sandbox/api-service/api-service-deployment.yaml
kubectl get pod,deployment,rs,svc,ing
fi
hh-dev:
stage: dev-deploy
services:
- name: $CI_REGISTRY/mouse-informatics/dind:latest
alias: docker
image: $CI_REGISTRY/mouse-informatics/helm-kubectl-alpine:latest
rules:
- if: '$PRODUCTION_DEPLOYMENT != "true" && $CI_PROJECT_NAMESPACE == "mouse-informatics" && $CI_COMMIT_REF_NAME == "master"'
script:
# Only deploy from the MPI2 impc-production-tracker repository rather than repository forks
- |
if [ ! -z ${HH_KUBERNETES_ENDPOINT+set} ]; then
apk --no-cache --update add jq curl
kubectl config set-cluster local --server="${HH_KUBERNETES_ENDPOINT}"
kubectl config set clusters.local.certificate-authority-data "${HH_KUBERNETES_CERTIFICATE_AUTHORITY_DATA}"
kubectl config set-credentials ${HH_KUBERNETES_DEV_USER} --token="${HH_KUBERNETES_DEV_USER_TOKEN}"
kubectl config set-context "${HH_KUBERNETES_DEV_NAMESPACE}" --cluster=local --user=${HH_KUBERNETES_DEV_USER} --namespace="${HH_KUBERNETES_DEV_NAMESPACE}"
kubectl config use-context "${HH_KUBERNETES_DEV_NAMESPACE}"
kubectl version
cd impc_prod_tracker
#
#
# Substitute the "latest" image tag in your deployment template with a more specific tag
# and record the deployment so you can rollback to this particular version.
#
# Need to check that the docker image corresponding to this CI_COMMIT_SHA exists in Docker Hub.
# Scheduled turnover of the container can still run for a CI_COMMIT_SHA where the build fail to complete.
# TOKEN=$( curl -sSLd "username=${DOCKER_HUB_USER}&password=${DOCKER_HUB_PSWD}" https://hub.docker.com/v2/users/login | jq -r ".token" )
# JSON=$( curl -sH "Authorization: JWT $TOKEN" "https://hub.docker.com/v2/repositories/${DOCKER_HUB_USER}/${DOCKER_HUB_REPO}/tags/${CI_COMMIT_SHA:0:12}/")
# IMAGE_TAG_NAME=$(echo $JSON | jq -r '.name')
REGISTRY_JSON=$( curl --header "PRIVATE-TOKEN: ${GITLAB_API_ACCESS_TOKEN}" "${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/registry/repositories/")
REGISTRY_REPOSITORY_ID=$(echo $REGISTRY_JSON | jq '.[0].id')
JSON=$( curl --header "PRIVATE-TOKEN: ${GITLAB_API_ACCESS_TOKEN}" "${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/registry/repositories/${REGISTRY_REPOSITORY_ID}/tags/${CI_COMMIT_SHA:0:12}/")
IMAGE_TAG_NAME=$(echo $JSON | jq -r '.name')
if [ "$IMAGE_TAG_NAME" = "${CI_COMMIT_SHA:0:12}" ]; then
# Substitute the "latest" image tag in your deployment template
sed -i "s/impc-production-tracker-mirror:latest/impc-production-tracker-mirror:${CI_COMMIT_SHA:0:12}/g" kube/wp/dev/api-service/api-service-deployment.yaml
else
# DO NOT push out the latest tag to ensure rollback is possible.
exit 1
fi
sed -i "s/STRING_REPLACED_DURING_REDEPLOY/$(date)/g" kube/wp/dev/api-service/api-service-deployment.yaml
if kubectl apply -f kube/wp/dev/api-service/api-service-deployment.yaml --record | grep -q unchanged; then
echo "=> Patching deployment to force image update."
kubectl patch -f kube/wp/dev/api-service/api-service-deployment.yaml --record -p "{\"spec\":{\"template\":{\"metadata\":{\"annotations\":{\"ci-last-updated\":\"$(date +'%s')\"}}}}}"
else
echo "=> Deployment apply has changed the object, no need to force image update."
fi
#
#
# Log the status of the application deployment
#
kubectl rollout status -f kube/wp/dev/api-service/api-service-deployment.yaml
kubectl get pod,deployment,rs,svc,ing
fi
hx-dev:
stage: dev-deploy
services:
- name: $CI_REGISTRY/mouse-informatics/dind:latest
alias: docker
image: $CI_REGISTRY/mouse-informatics/helm-kubectl-alpine:latest
rules:
- if: '$PRODUCTION_DEPLOYMENT != "true" && $CI_PROJECT_NAMESPACE == "mouse-informatics" && $CI_COMMIT_REF_NAME == "master"'
script:
# Only deploy from the MPI2 impc-production-tracker repository rather than repository forks
- |
if [ ! -z ${HX_KUBERNETES_ENDPOINT+set} ]; then
apk --no-cache --update add jq curl
kubectl config set-cluster local --server="${HX_KUBERNETES_ENDPOINT}"
kubectl config set clusters.local.certificate-authority-data "${HX_KUBERNETES_CERTIFICATE_AUTHORITY_DATA}"
kubectl config set-credentials ${HX_KUBERNETES_DEV_USER} --token="${HX_KUBERNETES_DEV_USER_TOKEN}"
kubectl config set-context "${HX_KUBERNETES_DEV_NAMESPACE}" --cluster=local --user=${HX_KUBERNETES_DEV_USER} --namespace="${HX_KUBERNETES_DEV_NAMESPACE}"
kubectl config use-context "${HX_KUBERNETES_DEV_NAMESPACE}"
kubectl version
cd impc_prod_tracker
#
#
# Substitute the "latest" image tag in your deployment template with a more specific tag
# and record the deployment so you can rollback to this particular version.
#
# Need to check that the docker image corresponding to this CI_COMMIT_SHA exists in Docker Hub.
# Scheduled turnover of the container can still run for a CI_COMMIT_SHA where the build fail to complete.
# TOKEN=$( curl -sSLd "username=${DOCKER_HUB_USER}&password=${DOCKER_HUB_PSWD}" https://hub.docker.com/v2/users/login | jq -r ".token" )
# JSON=$( curl -sH "Authorization: JWT $TOKEN" "https://hub.docker.com/v2/repositories/${DOCKER_HUB_USER}/${DOCKER_HUB_REPO}/tags/${CI_COMMIT_SHA:0:12}/")
# IMAGE_TAG_NAME=$(echo $JSON | jq -r '.name')
REGISTRY_JSON=$( curl --header "PRIVATE-TOKEN: ${GITLAB_API_ACCESS_TOKEN}" "${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/registry/repositories/")
REGISTRY_REPOSITORY_ID=$(echo $REGISTRY_JSON | jq '.[0].id')
JSON=$( curl --header "PRIVATE-TOKEN: ${GITLAB_API_ACCESS_TOKEN}" "${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/registry/repositories/${REGISTRY_REPOSITORY_ID}/tags/${CI_COMMIT_SHA:0:12}/")
IMAGE_TAG_NAME=$(echo $JSON | jq -r '.name')
if [ "$IMAGE_TAG_NAME" = "${CI_COMMIT_SHA:0:12}" ]; then
# Substitute the "latest" image tag in your deployment template
sed -i "s/impc-production-tracker-mirror:latest/impc-production-tracker-mirror:${CI_COMMIT_SHA:0:12}/g" kube/wp/dev/api-service/api-service-deployment.yaml
else
# DO NOT push out the latest tag to ensure rollback is possible.
exit 1
fi
sed -i "s/STRING_REPLACED_DURING_REDEPLOY/$(date)/g" kube/wp/dev/api-service/api-service-deployment.yaml
sed -i "s/HL_PROXY/HX_PROXY/g" kube/wp/dev/api-service/api-service-deployment.yaml
if kubectl apply -f kube/wp/dev/api-service/api-service-deployment.yaml --record | grep -q unchanged; then
echo "=> Patching deployment to force image update."
kubectl patch -f kube/wp/dev/api-service/api-service-deployment.yaml --record -p "{\"spec\":{\"template\":{\"metadata\":{\"annotations\":{\"ci-last-updated\":\"$(date +'%s')\"}}}}}"
else
echo "=> Deployment apply has changed the object, no need to force image update."
fi
#
#
# Log the status of the application deployment
#
kubectl rollout status -f kube/wp/dev/api-service/api-service-deployment.yaml
kubectl get pod,deployment,rs,svc,ing
fi
hh-test:
stage: test-deploy
services:
- name: $CI_REGISTRY/mouse-informatics/dind:latest
alias: docker
image: $CI_REGISTRY/mouse-informatics/helm-kubectl-alpine:latest
rules:
- if: '$CI_COMMIT_REF_NAME == "master"'
when: never
- if: '$PRODUCTION_DEPLOYMENT != "true" && $CI_PROJECT_NAMESPACE == "mouse-informatics"'
script:
# Only deploy from the MPI2 impc-production-tracker repository rather than repository forks
- |
if [ ! -z ${HH_KUBERNETES_ENDPOINT+set} ]; then
apk --no-cache --update add jq curl
kubectl config set-cluster local --server="${HH_KUBERNETES_ENDPOINT}"
kubectl config set clusters.local.certificate-authority-data "${HH_KUBERNETES_CERTIFICATE_AUTHORITY_DATA}"
kubectl config set-credentials ${HH_KUBERNETES_TEST_USER} --token="${HH_KUBERNETES_TEST_USER_TOKEN}"
kubectl config set-context "${HH_KUBERNETES_TEST_NAMESPACE}" --cluster=local --user=${HH_KUBERNETES_TEST_USER} --namespace="${HH_KUBERNETES_TEST_NAMESPACE}"
kubectl config use-context "${HH_KUBERNETES_TEST_NAMESPACE}"
kubectl version
cd impc_prod_tracker
#
#
# Substitute the "latest" image tag in your deployment template with a more specific tag
# and record the deployment so you can rollback to this particular version.
#
# Need to check that the docker image corresponding to this CI_COMMIT_SHA exists in Docker Hub.
# Scheduled turnover of the container can still run for a CI_COMMIT_SHA where the build fail to complete.
# TOKEN=$( curl -sSLd "username=${DOCKER_HUB_USER}&password=${DOCKER_HUB_PSWD}" https://hub.docker.com/v2/users/login | jq -r ".token" )
# JSON=$( curl -sH "Authorization: JWT $TOKEN" "https://hub.docker.com/v2/repositories/${DOCKER_HUB_USER}/${DOCKER_HUB_REPO}/tags/${CI_COMMIT_SHA:0:12}/")
# IMAGE_TAG_NAME=$(echo $JSON | jq -r '.name')
REGISTRY_JSON=$( curl --header "PRIVATE-TOKEN: ${GITLAB_API_ACCESS_TOKEN}" "${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/registry/repositories/")
REGISTRY_REPOSITORY_ID=$(echo $REGISTRY_JSON | jq '.[0].id')
JSON=$( curl --header "PRIVATE-TOKEN: ${GITLAB_API_ACCESS_TOKEN}" "${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/registry/repositories/${REGISTRY_REPOSITORY_ID}/tags/${CI_COMMIT_SHA:0:12}/")
IMAGE_TAG_NAME=$(echo $JSON | jq -r '.name')
if [ "$IMAGE_TAG_NAME" = "${CI_COMMIT_SHA:0:12}" ]; then
# Substitute the "latest" image tag in your deployment template
sed -i "s/impc-production-tracker-mirror:latest/impc-production-tracker-mirror:${CI_COMMIT_SHA:0:12}/g" kube/wp/test/api-service/api-service-deployment.yaml
else
# DO NOT push out the latest tag to ensure rollback is possible.
exit 1
fi
sed -i "s/STRING_REPLACED_DURING_REDEPLOY/$(date)/g" kube/wp/test/api-service/api-service-deployment.yaml
if kubectl apply -f kube/wp/test/api-service/api-service-deployment.yaml --record | grep -q unchanged; then
echo "=> Patching deployment to force image update."
kubectl patch -f kube/wp/test/api-service/api-service-deployment.yaml --record -p "{\"spec\":{\"template\":{\"metadata\":{\"annotations\":{\"ci-last-updated\":\"$(date +'%s')\"}}}}}"
else
echo "=> Deployment apply has changed the object, no need to force image update."
fi
#
#
# Log the status of the application deployment
#
kubectl rollout status -f kube/wp/test/api-service/api-service-deployment.yaml
kubectl get pod,deployment,rs,svc,ing
fi
hx-test:
stage: test-deploy
services:
- name: $CI_REGISTRY/mouse-informatics/dind:latest
alias: docker
image: $CI_REGISTRY/mouse-informatics/helm-kubectl-alpine:latest
rules:
- if: '$CI_COMMIT_REF_NAME == "master"'
when: never
- if: '$PRODUCTION_DEPLOYMENT != "true" && $CI_PROJECT_NAMESPACE == "mouse-informatics"'
script:
# Only deploy from the MPI2 impc-production-tracker repository rather than repository forks
- |
if [ ! -z ${HX_KUBERNETES_ENDPOINT+set} ]; then
apk --no-cache --update add jq curl
kubectl config set-cluster local --server="${HX_KUBERNETES_ENDPOINT}"
kubectl config set clusters.local.certificate-authority-data "${HX_KUBERNETES_CERTIFICATE_AUTHORITY_DATA}"
kubectl config set-credentials ${HX_KUBERNETES_TEST_USER} --token="${HX_KUBERNETES_TEST_USER_TOKEN}"
kubectl config set-context "${HX_KUBERNETES_TEST_NAMESPACE}" --cluster=local --user=${HX_KUBERNETES_TEST_USER} --namespace="${HX_KUBERNETES_TEST_NAMESPACE}"
kubectl config use-context "${HX_KUBERNETES_TEST_NAMESPACE}"
kubectl version
cd impc_prod_tracker
#
#
# Substitute the "latest" image tag in your deployment template with a more specific tag
# and record the deployment so you can rollback to this particular version.
#
# Need to check that the docker image corresponding to this CI_COMMIT_SHA exists in Docker Hub.
# Scheduled turnover of the container can still run for a CI_COMMIT_SHA where the build fail to complete.
# TOKEN=$( curl -sSLd "username=${DOCKER_HUB_USER}&password=${DOCKER_HUB_PSWD}" https://hub.docker.com/v2/users/login | jq -r ".token" )
# JSON=$( curl -sH "Authorization: JWT $TOKEN" "https://hub.docker.com/v2/repositories/${DOCKER_HUB_USER}/${DOCKER_HUB_REPO}/tags/${CI_COMMIT_SHA:0:12}/")
# IMAGE_TAG_NAME=$(echo $JSON | jq -r '.name')
REGISTRY_JSON=$( curl --header "PRIVATE-TOKEN: ${GITLAB_API_ACCESS_TOKEN}" "${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/registry/repositories/")
REGISTRY_REPOSITORY_ID=$(echo $REGISTRY_JSON | jq '.[0].id')
JSON=$( curl --header "PRIVATE-TOKEN: ${GITLAB_API_ACCESS_TOKEN}" "${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/registry/repositories/${REGISTRY_REPOSITORY_ID}/tags/${CI_COMMIT_SHA:0:12}/")
IMAGE_TAG_NAME=$(echo $JSON | jq -r '.name')
if [ "$IMAGE_TAG_NAME" = "${CI_COMMIT_SHA:0:12}" ]; then
# Substitute the "latest" image tag in your deployment template
sed -i "s/impc-production-tracker-mirror:latest/impc-production-tracker-mirror:${CI_COMMIT_SHA:0:12}/g" kube/wp/test/api-service/api-service-deployment.yaml
else
# DO NOT push out the latest tag to ensure rollback is possible.
exit 1
fi
sed -i "s/STRING_REPLACED_DURING_REDEPLOY/$(date)/g" kube/wp/test/api-service/api-service-deployment.yaml
sed -i "s/HL_PROXY/HX_PROXY/g" kube/wp/test/api-service/api-service-deployment.yaml
if kubectl apply -f kube/wp/test/api-service/api-service-deployment.yaml --record | grep -q unchanged; then
echo "=> Patching deployment to force image update."
kubectl patch -f kube/wp/test/api-service/api-service-deployment.yaml --record -p "{\"spec\":{\"template\":{\"metadata\":{\"annotations\":{\"ci-last-updated\":\"$(date +'%s')\"}}}}}"
else
echo "=> Deployment apply has changed the object, no need to force image update."
fi
#
#
# Log the status of the application deployment
#
kubectl rollout status -f kube/wp/test/api-service/api-service-deployment.yaml
kubectl get pod,deployment,rs,svc,ing
fi