bbeaR: an R package and framework for epitope-specific antibody profiling

Installation

library(devtools)
install_github('msuprun/bbeaR')

Usage

See the full vignettes for Egg (single assay plate) or Milk (multi-plate assay).

Citation

Suprun et al (2021) "bbeaR: an R package and framework for epitope-specific antibody profiling". Bioinformatics PMID: 33471075

Published work using bbeaR's functionality

Suprun et al (2020) "Early epitope-specific IgE antibodies are predictive of childhood peanut allergy". J Allergy Clin Immunol PMID: 32795587

Suprun et al (2020) "Ovomucoid epitope-specific repertoire of IgE, IgG4, IgG1, IgA1, and IgD antibodies in egg-allergic children." Allergy PMID: 32391917

Suarez-Farinas et al (2018) "Predicting development of sustained unresponsiveness to milk oral immunotherapy using epitope-specific antibody binding profiles." J Allergy Clin Immunol PMID: 30528770

Suprun et al (2018) "Novel Bead-Based Epitope Assay is a sensitive and reliable tool for profiling epitope-specific antibody repertoire in food allergy." Sci Rep PMID: 31804555

Sackesen et al (2018) "A new Luminex-based peptide assay to identify reactivity to baked, fermented, and whole milk." Allergy PMID: 30058196