Releases: murphygroup/CellSegmentationEvaluator
v1.5 convert to PyPI package
Reconcile differences with the 3D cell segmentation evaluation code in 3DCellComposer. Convert seg_eval_pkg.py to a PyPI package named CellSegmentationEvaluator and import that package for use in SimpleCSE. Add new function CSE3D as an alternative to "single_method_eval_3D" so that inputs can be nd-arrays rather than AICSImage structures.
v1.4 Simple CSE
Added cell nuclear matching and repairing.
v1.3 Simple CSE
Updates to Metrics for 3D Cell Segmentation: Updated existing metrics and introduced new ones to enhance the evaluation of 3D cell segmentation.
Refined Quality Score Calculation: Adjusted the quality score calculation to have a lower bound of 0, providing a clearer reference point for users.
v1.2 Simple CSE
Created a slim version of CellSegmentationEvaluator (SimpleCSE) that solely calculate the evaluation metrics and segmentation quality score for cell segmentation methods.