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"not s4" error with get_fastq() #8

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francoiskroll opened this issue May 24, 2018 · 0 comments

francoiskroll commented May 24, 2018 •

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Probably not an actual issue with the package, but I am not sure where to ask. I am having a little difficulty with the get_fastq() command. I am using data I found online as a test (chr20:part5, https://github.com/nanopore-wgs-consortium/NA12878/blob/master/Genome.md).

get_fastq(.../DEAMERNANOPORE_20161117_FNFAB43577_MN16450_sequencing_run_MA_821_R9_4_NA12878_11_17_16_88738_ch66_read1033_strand1.fast5)

Warning message:
In get_fastq(".../DEAMERNANOPORE_20161117_FNFAB43577_MN16450_sequencing_run_MA_821_R9_4_NA12878_11_17_16_88738_ch66_read1033_strand1.fast5") :
  not s4

Can you help?

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