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Surface water network

DOI Codacy Codcov CI

A Python package to create and analyze surface water networks.

Python packages

Python 3.9+ is required.

Required

  • geopandas >=0.9 - process spatial data similar to pandas
  • packaging - used to check package versions
  • pandas >=1.2 - tabular data analysis
  • pyproj >=2.2 - spatial projection support
  • rtree - spatial index support

Optional

  • flopy >=3.3.6 - read/write MODFLOW models
  • netCDF4 - used to read TopNet files

Testing

Run pytest -v or python3 -m pytest -v

For faster multi-core pytest -v -n 2 (with pytest-xdist)

To run doctests pytest -v swn --doctest-modules

Examples

import geopandas
import pandas as pd
import swn

Read from Shapefile:

shp_srs = 'tests/data/DN2_Coastal_strahler1z_stream_vf.shp'
lines = geopandas.read_file(shp_srs)
lines.set_index('nzsegment', inplace=True, verify_integrity=True)  # optional

Or, read from PostGIS:

from sqlalchemy import create_engine, engine

con_url = engine.url.URL(drivername='postgresql', database='scigen')
con = create_engine(con_url)
sql = 'SELECT * FROM wrc.rec2_riverlines_coastal'
lines = geopandas.read_postgis(sql, con)
lines.set_index('nzsegment', inplace=True, verify_integrity=True)  # optional

Initialise and create network:

n = swn.SurfaceWaterNetwork.from_lines(lines.geometry)
print(n)
# <SurfaceWaterNetwork: with Z coordinates
#   304 segments: [3046409, 3046455, ..., 3050338, 3050418]
#   154 headwater: [3046409, 3046542, ..., 3050338, 3050418]
#   3 outlets: [3046700, 3046737, 3046736]
#   no diversions />

Plot the network, write a Shapefile, write and read a SurfaceWaterNetwork file:

n.plot()

swn.file.gdf_to_shapefile(n.segments, 'segments.shp')

n.to_pickle('network.pkl')
n = swn.SurfaceWaterNetwork.from_pickle('network.pkl')

Remove segments that meet a condition (stream order), or that are upstream/downstream from certain locations:

n.remove(
    n.segments.stream_order == 1,
    segnums=n.gather_segnums(upstream=3047927))

Read flow data from a TopNet netCDF file, convert from m3/s to m3/day:

nc_path = 'tests/data/streamq_20170115_20170128_topnet_03046727_strahler1.nc'
flow = swn.file.topnet2ts(nc_path, 'mod_flow', 86400)
# remove time and truncate to closest day
flow.index = flow.index.floor('d')

# 7-day mean
flow7d = flow.resample('7D').mean()

# full mean
flow_m = pd.DataFrame(flow.mean(0)).T

Process a MODFLOW/flopy model:

import flopy

m = flopy.modflow.Modflow.load('h.nam', model_ws='tests/data', check=False)
nm = swn.SwnModflow.from_swn_flopy(n, m)
nm.default_segment_data()
nm.set_segment_data_inflow(flow_m)
nm.plot()
nm.to_pickle('sfr_network.pkl')
nm = swn.SwnModflow.from_pickle('sfr_network.pkl', n, m)
nm.set_sfr_obj()
m.sfr.write_file('file.sfr')
nm.grid_cells.to_file('grid_cells.shp')
nm.reaches.to_file('reaches.shp')

Citation

Toews, M. W.; Hemmings, B. 2019. A surface water network method for generalising streams and rapid groundwater model development. In: New Zealand Hydrological Society Conference, Rotorua, 3-6 December, 2019. p. 166-169.